RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 RPL7L1Q6DKI1 246 aaKnown RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 IGFL1Q6UW32 110 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 PHF5AQ7RTV0 110 aaKnown RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 OR5AS1Q8N127 324 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 FAM216BQ8N7L0 139 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 TSKUQ8WUA8 353 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 PPDPFLQ8WWR9 84 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 SCGB3A1Q96QR1 104 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 IMMP2LQ96T52 175 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 TTTY13Q9BZ97 58 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 SLC35B3Q9H1N7 401 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 TMEM242Q9NWH2 141 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 TAS2R4Q9NYW5 299 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 TP73-AS1Q9UF72 201 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 DYNC2H1Q8NCM8 4307 aaKnown RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 LYSTQ99698 3801 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 DNAH3Q8TD57 4116 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 TENM2Q9NT68 2774 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 DNAH1Q9P2D7 4330 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 IGKV1D-43A0A0B4J1Z2 117 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 LOC107984156A0A0G2JMH3 177 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 UBE2L5PA0A1B0GUS4 154 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 LOC107986453A0A1B0GWG9 222 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 A0A1W2PPM0 123 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 RBAKDNA6NC62 111 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 NAP1L6A6NFF2 107 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 H3BUT2 72 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 LEPROTO15243 131 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 LYRM1O43325 122 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 PSCAO43653 123 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 TIMM17BO60830 172 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 IGKV1-5P01602 117 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 SHBGP04278 402 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 SMIM13P0DJ93 91 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 HRES1P13985 223 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 COL8A2P25067 703 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 HLA-DMBP28068 263 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 PEBP1P30086 187 aaKnown RBP1.62□□□□□ -2.15
VPS4B-203ENST00000588323 ZNF345Q14585 488 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 DEFB110Q30KQ9 67 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 DEFB134Q4QY38 66 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 PYDC2Q56P42 97 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 PRR9Q5T870 116 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 C7orf65Q6ZTY9 151 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 C2orf91Q6ZV80 131 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 MIR17HGQ75NE6 70 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 ARL17AQ8IVW1 177 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 C15orf53Q8NAA6 179 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 CLDND2Q8NHS1 167 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 CHCHD1Q96BP2 118 aaKnown RBP1.62□□□□□ -2.15
VPS4B-203ENST00000588323 HIGD2AQ9BW72 106 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 XAGE1AQ9HD64 81 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 MED12Q93074 2177 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 ANKRD36A6QL64 1941 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 ZNF407Q9C0G0 2248 aa1.62□□□□□ -2.15
VPS4B-203ENST00000588323 ABCA13Q86UQ4 5058 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 DSCAMO60469 2012 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 CR1P17927 2039 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 NUP210LQ5VU65 1888 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 A0A087WWC5 75 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 IGHV3-15A0A0B4J1V0 119 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 TRAV2A0A0B4J234 112 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 IGHV1-24A0A0C4DH33 117 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 HMSDA8MTL9 139 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 C3orf84H3BNL1 204 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 ATOX1O00244 68 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 CREBL2O60519 120 aaPredicted RBP1.61□□□□□ -2.15
VPS4B-203ENST00000588323 NPYP01303 97 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 IGKCP01834 107 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 SFTA3P0C7M3 94 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 CBLN1P23435 193 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 XCL1P47992 114 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 ATP5EP56381 51 aaPredicted RBP1.61□□□□□ -2.15
VPS4B-203ENST00000588323 SMIM11AP58511 58 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 RBM3P98179 157 aaKnown RBP1.61□□□□□ -2.15
VPS4B-203ENST00000588323 SS18Q15532 418 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 ETDBQ3ZM63 59 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 S100A7L2Q5SY68 101 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 BVES-AS1Q5T3Y7 98 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 C12orf73Q69YU5 71 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 SOSTDC1Q6X4U4 206 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 KRTAP13-1Q8IUC0 172 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 OR8B3Q8NGG8 313 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 SMCR5Q8TEV8 140 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 LSM10Q969L4 123 aaKnown RBP1.61□□□□□ -2.15
VPS4B-203ENST00000588323 DSCR8Q96T75 97 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 C20orf78Q9BR46 151 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 TTTY12Q9BZ98 90 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 DPH3P1Q9H4G8 78 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 NXT2Q9NPJ8 142 aaKnown RBP1.61□□□□□ -2.15
VPS4B-203ENST00000588323 NDUFB11Q9NX14 153 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 COL7A1Q02388 2944 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 DOCK4Q8N1I0 1966 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 ALPK2Q86TB3 2170 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 DNAH7Q8WXX0 4024 aa1.61□□□□□ -2.15
VPS4B-203ENST00000588323 CPAMD8Q8IZJ3 1885 aa1.6□□□□□ -2.15
VPS4B-203ENST00000588323 STAB2Q8WWQ8 2551 aa1.6□□□□□ -2.15
VPS4B-203ENST00000588323 MALRD1Q5VYJ5 2156 aa1.6□□□□□ -2.15
VPS4B-203ENST00000588323 MDFIC2A0A1B0GVS7 189 aa1.6□□□□□ -2.15
VPS4B-203ENST00000588323 A0A1W2PQD3 144 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms