RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NPSP0C0P6 89 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 S100PP25815 95 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 HIGD2BQ4VC39 106 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 LCE2AQ5TA79 106 aaPredicted RBP6.83□□□□□ -1.32
VPS53-207ENST00000570510 MRPL54Q6P161 138 aaKnown RBP6.83□□□□□ -1.32
VPS53-207ENST00000570510 TMEM136Q6ZRR5 245 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 SMIM2Q9BVW6 85 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 CDC42SE2Q9NRR3 84 aa6.83□□□□□ -1.32
VPS53-207ENST00000570510 A0A096LNI7 61 aa6.82□□□□□ -1.32
VPS53-207ENST00000570510 D6R8Y8 96 aa6.82□□□□□ -1.32
VPS53-207ENST00000570510 RNASEKQ6P5S7 137 aaKnown RBP6.82□□□□□ -1.32
VPS53-207ENST00000570510 COMMD7Q86VX2 200 aa6.82□□□□□ -1.32
VPS53-207ENST00000570510 SPANXA1Q9NS26 97 aa6.82□□□□□ -1.32
VPS53-207ENST00000570510 C1orf196B1AJZ1 125 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 MT-ND6P03923 174 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 ADCYAP1P18509 176 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 RAB5AP20339 215 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 MRPS36P82909 103 aaKnown RBP6.81□□□□□ -1.32
VPS53-207ENST00000570510 PRR26Q8N8Z3 221 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 PRELID3AQ96N28 172 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 PYGO1Q9Y3Y4 419 aa6.81□□□□□ -1.32
VPS53-207ENST00000570510 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.8□□□□□ -1.32
VPS53-207ENST00000570510 IGKV3OR2-268A0A0C4DH90 116 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 IGKV2-29A2NJV5 120 aaPredicted RBP6.8□□□□□ -1.32
VPS53-207ENST00000570510 GAGE12HA6NDE8 117 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 SS18Q15532 418 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 NDUFA5Q16718 116 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 CD164L2Q6UWJ8 174 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 GNB1LQ9BYB4 327 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 MAP1LC3AQ9H492 121 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 NXT2Q9NPJ8 142 aaKnown RBP6.8□□□□□ -1.32
VPS53-207ENST00000570510 UBE2D4Q9Y2X8 147 aa6.8□□□□□ -1.32
VPS53-207ENST00000570510 LINC00959A0A1B0GUT2 108 aa6.79□□□□□ -1.32
VPS53-207ENST00000570510 SMKR1H3BMG3 65 aa6.79□□□□□ -1.32
VPS53-207ENST00000570510 C15orf56Q8N910 161 aa6.79□□□□□ -1.32
VPS53-207ENST00000570510 CHCHD10Q8WYQ3 142 aaPredicted RBP6.79□□□□□ -1.32
VPS53-207ENST00000570510 F8WDY8 70 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 NPYP01303 97 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 ORMDL2Q53FV1 153 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 SVBPQ8N300 66 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 Q8N8P6 123 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 DIRC1Q969H9 104 aa6.78□□□□□ -1.32
VPS53-207ENST00000570510 GVQW2A0A096LPI5 108 aaPredicted RBP6.77□□□□□ -1.33
VPS53-207ENST00000570510 IGHV1-58A0A0C4DH39 117 aa6.77□□□□□ -1.33
VPS53-207ENST00000570510 SNAPINO95295 136 aa6.77□□□□□ -1.33
VPS53-207ENST00000570510 UBE2D1P51668 147 aa6.77□□□□□ -1.33
VPS53-207ENST00000570510 C1orf137Q5JT78 98 aa6.77□□□□□ -1.33
VPS53-207ENST00000570510 PAPPA-AS1Q5QFB9 102 aa6.77□□□□□ -1.33
VPS53-207ENST00000570510 IFI27P40305 119 aaPredicted RBP6.76□□□□□ -1.33
VPS53-207ENST00000570510 FOXI1Q12951 378 aa6.76□□□□□ -1.33
VPS53-207ENST00000570510 APOMO95445 188 aa6.75□□□□□ -1.33
VPS53-207ENST00000570510 LINC01561Q8N1V8 128 aa6.75□□□□□ -1.33
VPS53-207ENST00000570510 CARD19Q96LW7 228 aa6.75□□□□□ -1.33
VPS53-207ENST00000570510 CYSLTR1Q9Y271 337 aa6.75□□□□□ -1.33
VPS53-207ENST00000570510 IGLV1-50A0A075B6I6 118 aa6.74□□□□□ -1.33
VPS53-207ENST00000570510 LINC01546A6NGU7 62 aa6.74□□□□□ -1.33
VPS53-207ENST00000570510 GAGE2BQ13066 116 aa6.74□□□□□ -1.33
VPS53-207ENST00000570510 RPS10P5Q9NQ39 176 aa6.74□□□□□ -1.33
VPS53-207ENST00000570510 COX7A2LO14548 114 aa6.73□□□□□ -1.33
VPS53-207ENST00000570510 SEC11AP67812 179 aa6.73□□□□□ -1.33
VPS53-207ENST00000570510 CRCT1Q9UGL9 99 aa6.73□□□□□ -1.33
VPS53-207ENST00000570510 ZNF561-AS1K7EIQ3 104 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 XCL1P47992 114 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 Q6ZN92 141 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 OR10D4PQ8NGN7 298 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 TMEM141Q96I45 108 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 C2orf48Q96LS8 159 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 TIMM17AQ99595 171 aa6.72□□□□□ -1.33
VPS53-207ENST00000570510 IGHV3OR16-9A0A0B4J2B5 98 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 APOC3P02656 99 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 MALP21145 153 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 RPL13AP40429 203 aaKnown RBP6.71□□□□□ -1.34
VPS53-207ENST00000570510 PTTG1IPP53801 180 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 RPL39P62891 51 aaKnown RBP6.71□□□□□ -1.34
VPS53-207ENST00000570510 RNF151Q2KHN1 245 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 C2orf66Q6UXQ4 117 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 Q6ZUT4 128 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 FAM19A3Q7Z5A8 133 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 C2orf88Q9BSF0 95 aa6.71□□□□□ -1.34
VPS53-207ENST00000570510 TRAV13-1A0A0B4J241 112 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 LOC107984640A0A0U1RRK4 108 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 TSPAN13O95857 204 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 SYCNQ0VAF6 134 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 TEX43Q6ZNM6 134 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 FAM104AQ969W3 186 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 LINC00526Q96FQ7 95 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 AMELXQ99217 191 aa6.7□□□□□ -1.34
VPS53-207ENST00000570510 ALKBH7Q9BT30 221 aaPredicted RBP6.7□□□□□ -1.34
VPS53-207ENST00000570510 IGLV4-3A0A075B6K6 122 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 TGIF2-C20orf24A0A0A6YYL0 155 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 LOC389332A0A1B0GUA5 103 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 IGIPA6NJ69 53 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 H0Y9J4 135 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 IGLV7-43P04211 117 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 ERASQ7Z444 233 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 TOMM6Q96B49 74 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 VCX2Q9H322 139 aa6.69□□□□□ -1.34
VPS53-207ENST00000570510 IGLV4-69A0A075B6H9 119 aa6.68□□□□□ -1.34
VPS53-207ENST00000570510 A0A087WZ39 114 aa6.68□□□□□ -1.34
VPS53-207ENST00000570510 IFITM10A6NMD0 228 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms