RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 IGLV1-51P01701 117 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 IGHV4-38-2P0DP08 117 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 BSPH1Q075Z2 132 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 Q6ZTI0 123 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 CHCHD10Q8WYQ3 142 aaPredicted RBP2.82□□□□□ -1.96
VPS39-212ENST00000570023 LEAP2Q969E1 77 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 DSCAMO60469 2012 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 TRGV2A0A075B6R0 118 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.81□□□□□ -1.96
VPS39-212ENST00000570023 IGHV3-72A0A0B4J1Y9 119 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 TRBV6-4A0A1B0GX49 114 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 PINLYPA6NC86 204 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 IGKV4-1P06312 121 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 RNASE13Q5GAN3 156 aaKnown RBP2.81□□□□□ -1.96
VPS39-212ENST00000570023 C10orf55Q5SWW7 151 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 ZNF843Q8N446 348 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 FDCSPQ8NFU4 85 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 FAM104AQ969W3 186 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 DEC1Q9P2X7 70 aa2.81□□□□□ -1.96
VPS39-212ENST00000570023 MYO7AQ13402 2215 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 GON4LQ3T8J9 2241 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 ABCA7Q8IZY2 2146 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 IGHV3OR16-13A0A075B7E8 117 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 IGHV1-3A0A0C4DH29 117 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 IGHV3-53P01767 116 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 RNASE3P12724 160 aaKnown RBP2.8□□□□□ -1.96
VPS39-212ENST00000570023 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 MUC7Q8TAX7 377 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 CDKN2A-AS1Q9UH64 79 aa2.8□□□□□ -1.96
VPS39-212ENST00000570023 SMIM1B2RUZ4 78 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 K7EQD1 137 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 NDUFA4O00483 81 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 RTL8CO15255 209 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 PRB4P10163 310 aaPredicted RBP2.79□□□□□ -1.96
VPS39-212ENST00000570023 CCL5P13501 91 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 COX7BP24311 80 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 LINC00242Q5T6M2 205 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 LINC00575Q6W349 94 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 ZFAND2AQ8N6M9 145 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 COX7B2Q8TF08 81 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 WFDC10AQ9H1F0 79 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 KCNQ1DNQ9H478 68 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 CCL26Q9Y258 94 aa2.79□□□□□ -1.96
VPS39-212ENST00000570023 TET2Q6N021 2002 aaPredicted RBP2.78□□□□□ -1.96
VPS39-212ENST00000570023 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.78□□□□□ -1.96
VPS39-212ENST00000570023 IGHV7-81A0A0B4J1V7 117 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 IGKV3-15P01624 115 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 CCL18P55774 89 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 ROMO1P60602 79 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 KLK9Q2XQG4 91 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 PRAC1Q96KF2 57 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 NACAE9PAV3 2078 aa2.78□□□□□ -1.96
VPS39-212ENST00000570023 IGLV4-60A0A075B6I1 120 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 IGLV11-55A0A075B6I3 123 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3OR16-8A0A075B7F1 116 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3-21A0A0B4J1V1 117 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3-35A0A0C4DH35 117 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 CLPSL1A2RUU4 121 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 B4DSR2 109 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 CDK2AP2O75956 126 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 IGHV4-59P01825 116 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 C1orf134Q5TEV5 83 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 GAFA1Q96PS6 74 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 CHCHD7Q9BUK0 85 aa2.77□□□□□ -1.97
VPS39-212ENST00000570023 ALPK2Q86TB3 2170 aa2.76□□□□□ -1.97
VPS39-212ENST00000570023 IGHV4-30-2A0A087WSY4 118 aa2.76□□□□□ -1.97
VPS39-212ENST00000570023 LINC00158P58513 81 aa2.76□□□□□ -1.97
VPS39-212ENST00000570023 SPAG11BQ08648 103 aa2.76□□□□□ -1.97
VPS39-212ENST00000570023 KPRPQ5T749 579 aaPredicted RBP2.76□□□□□ -1.97
VPS39-212ENST00000570023 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.76□□□□□ -1.97
VPS39-212ENST00000570023 Q8NAQ8 132 aa2.76□□□□□ -1.97
VPS39-212ENST00000570023 MYO7BQ6PIF6 2116 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3-20A0A0C4DH32 117 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3-66A0A0C4DH42 116 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 A0A1W2PNM2 257 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 KRTAP16-1A8MUX0 517 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 IGHV1-8P0DP01 117 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 HIGD2BQ4VC39 106 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 PRR9Q5T870 116 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 SPAG11AQ6PDA7 123 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 LINC01006Q8NI28 216 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 PATE1Q8WXA2 126 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 FER1L5A0AVI2 2057 aa2.75□□□□□ -1.97
VPS39-212ENST00000570023 MED12Q93074 2177 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 IGLV7-46A0A075B6I9 117 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 A0A096LNT2 108 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3-64DA0A0J9YX35 117 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 CYSRT1A8MQ03 144 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 H0Y9P7 68 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 M0R2N4 97 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 TFF1P04155 84 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 CCL3P10147 92 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 COX6A2Q02221 97 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
VPS39-212ENST00000570023 CXCL17Q6UXB2 119 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 COA5Q86WW8 74 aa2.74□□□□□ -1.97
VPS39-212ENST00000570023 INTS1Q8N201 2190 aaKnown RBP2.74□□□□□ -1.97
VPS39-212ENST00000570023 IGHV3OR16-12A0A075B7B8 117 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 ATP6V0E1O15342 81 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 181.6 ms