RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 MRPL18Q9H0U6 180 aaKnown RBP10.44□□□□□ -0.74
HDGFL3-203ENST00000563404 SMKR1H3BMG3 65 aa10.43□□□□□ -0.74
HDGFL3-203ENST00000563404 I3L3M4 83 aa10.43□□□□□ -0.74
HDGFL3-203ENST00000563404 ESDP10768 282 aa10.43□□□□□ -0.74
HDGFL3-203ENST00000563404 ZNF25P17030 456 aaPredicted RBP10.43□□□□□ -0.74
HDGFL3-203ENST00000563404 SRSF9Q13242 221 aaKnown RBP eCLIP10.43□□□□□ -0.74
HDGFL3-203ENST00000563404 IGHV1-58A0A0C4DH39 117 aa10.42□□□□□ -0.74
HDGFL3-203ENST00000563404 TSHBP01222 138 aa10.42□□□□□ -0.74
HDGFL3-203ENST00000563404 PMCHP20382 165 aa10.42□□□□□ -0.74
HDGFL3-203ENST00000563404 SPINK6Q6UWN8 80 aa10.42□□□□□ -0.74
HDGFL3-203ENST00000563404 ALKBH7Q9BT30 221 aaPredicted RBP10.42□□□□□ -0.74
HDGFL3-203ENST00000563404 K7EMI3 77 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 SCO1O75880 301 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 NPYP01303 97 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 RAB5AP20339 215 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 CARD19Q96LW7 228 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 LINC00474Q9P2X8 69 aa10.41□□□□□ -0.74
HDGFL3-203ENST00000563404 TMEM101Q96IK0 257 aa10.4□□□□□ -0.74
HDGFL3-203ENST00000563404 KIR2DL4Q99706 377 aa10.4□□□□□ -0.74
HDGFL3-203ENST00000563404 MAP1LC3AQ9H492 121 aa10.4□□□□□ -0.74
HDGFL3-203ENST00000563404 CDC42SE2Q9NRR3 84 aa10.4□□□□□ -0.74
HDGFL3-203ENST00000563404 KIAA1644Q3SXP7 199 aa10.39□□□□□ -0.75
HDGFL3-203ENST00000563404 SMIM2Q9BVW6 85 aa10.39□□□□□ -0.75
HDGFL3-203ENST00000563404 SYCNQ0VAF6 134 aa10.38□□□□□ -0.75
HDGFL3-203ENST00000563404 CD164L2Q6UWJ8 174 aa10.38□□□□□ -0.75
HDGFL3-203ENST00000563404 MRPL52Q86TS9 123 aaKnown RBP10.38□□□□□ -0.75
HDGFL3-203ENST00000563404 Q8N8P6 123 aa10.38□□□□□ -0.75
HDGFL3-203ENST00000563404 NXT2Q9NPJ8 142 aaKnown RBP10.38□□□□□ -0.75
HDGFL3-203ENST00000563404 REG3GQ6UW15 175 aa10.37□□□□□ -0.75
HDGFL3-203ENST00000563404 Q6ZRP5 223 aa10.37□□□□□ -0.75
HDGFL3-203ENST00000563404 LPAP08519 4548 aa10.37□□□□□ -0.75
HDGFL3-203ENST00000563404 PTTG1IPP53801 180 aa10.36□□□□□ -0.75
HDGFL3-203ENST00000563404 SS18Q15532 418 aa10.36□□□□□ -0.75
HDGFL3-203ENST00000563404 ZNF664Q8N3J9 261 aa10.36□□□□□ -0.75
HDGFL3-203ENST00000563404 PKIGQ9Y2B9 76 aa10.36□□□□□ -0.75
HDGFL3-203ENST00000563404 A0A1W2PNN7 141 aa10.35□□□□□ -0.75
HDGFL3-203ENST00000563404 ZNF561-AS1K7EIQ3 104 aa10.35□□□□□ -0.75
HDGFL3-203ENST00000563404 TRGC2P03986 189 aa10.35□□□□□ -0.75
HDGFL3-203ENST00000563404 FCER1GP30273 86 aa10.35□□□□□ -0.75
HDGFL3-203ENST00000563404 IGLV4-69A0A075B6H9 119 aa10.34□□□□□ -0.75
HDGFL3-203ENST00000563404 LINC01546A6NGU7 62 aa10.34□□□□□ -0.75
HDGFL3-203ENST00000563404 G0S2P27469 103 aa10.34□□□□□ -0.75
HDGFL3-203ENST00000563404 GAGE2BQ13066 116 aa10.34□□□□□ -0.75
HDGFL3-203ENST00000563404 LOC389332A0A1B0GUA5 103 aa10.33□□□□□ -0.76
HDGFL3-203ENST00000563404 SMAGPQ0VAQ4 97 aa10.33□□□□□ -0.76
HDGFL3-203ENST00000563404 C18orf32Q8TCD1 76 aa10.33□□□□□ -0.76
HDGFL3-203ENST00000563404 LOC107984640A0A0U1RRK4 108 aa10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 IFI27P40305 119 aaPredicted RBP10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 RAB5BP61020 215 aa10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 ORMDL2Q53FV1 153 aa10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 RNASE13Q5GAN3 156 aaKnown RBP10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 TMEM18Q96B42 140 aa10.32□□□□□ -0.76
HDGFL3-203ENST00000563404 LINC01549A6NIU2 74 aa10.31□□□□□ -0.76
HDGFL3-203ENST00000563404 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 LINC00614P0C842 121 aa10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 TIMM21Q9BVV7 248 aa10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 PSORS1C2Q9UIG4 136 aa10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 UBE2D4Q9Y2X8 147 aa10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 CSDC2Q9Y534 153 aaKnown RBP10.3□□□□□ -0.76
HDGFL3-203ENST00000563404 C1orf196B1AJZ1 125 aa10.29□□□□□ -0.76
HDGFL3-203ENST00000563404 COX7A2LO14548 114 aa10.29□□□□□ -0.76
HDGFL3-203ENST00000563404 MALP21145 153 aa10.29□□□□□ -0.76
HDGFL3-203ENST00000563404 C9orf116Q5BN46 136 aaPredicted RBP10.29□□□□□ -0.76
HDGFL3-203ENST00000563404 CAMK2N2Q96S95 79 aa10.29□□□□□ -0.76
HDGFL3-203ENST00000563404 APOMO95445 188 aa10.28□□□□□ -0.76
HDGFL3-203ENST00000563404 FA2HQ7L5A8 372 aa10.28□□□□□ -0.76
HDGFL3-203ENST00000563404 TRAV13-1A0A0B4J241 112 aa10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 NPSP0C0P6 89 aa10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 Q6ZUT4 128 aa10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 PHF5AQ7RTV0 110 aaKnown RBP10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 C5orf38Q86SI9 138 aa10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 CHCHD1Q96BP2 118 aaKnown RBP10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 OPRPNQ99935 248 aaPredicted RBP10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 PYGO1Q9Y3Y4 419 aa10.27□□□□□ -0.77
HDGFL3-203ENST00000563404 C2orf48Q96LS8 159 aa10.26□□□□□ -0.77
HDGFL3-203ENST00000563404 SPANXA1Q9NS26 97 aa10.26□□□□□ -0.77
HDGFL3-203ENST00000563404 RPL18AQ02543 176 aaKnown RBP10.25□□□□□ -0.77
HDGFL3-203ENST00000563404 URB1-AS1Q96HZ7 61 aa10.25□□□□□ -0.77
HDGFL3-203ENST00000563404 CYSLTR1Q9Y271 337 aa10.25□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BKO60814 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BJP06899 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BOP23527 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BBP33778 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BDP58876 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BCP62807 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST2H2BEQ16778 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 C1orf137Q5JT78 98 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 BAGE3Q86Y29 109 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BHQ93079 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 FAM104AQ969W3 186 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BNQ99877 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 HIST1H2BMQ99879 126 aa10.24□□□□□ -0.77
HDGFL3-203ENST00000563404 MRPS36P82909 103 aaKnown RBP10.23□□□□□ -0.77
HDGFL3-203ENST00000563404 SPAG11BQ08648 103 aa10.23□□□□□ -0.77
HDGFL3-203ENST00000563404 C2orf66Q6UXQ4 117 aa10.23□□□□□ -0.77
HDGFL3-203ENST00000563404 KRTAP11-1Q8IUC1 163 aa10.23□□□□□ -0.77
HDGFL3-203ENST00000563404 TOMM6Q96B49 74 aa10.23□□□□□ -0.77
HDGFL3-203ENST00000563404 RNF151Q2KHN1 245 aa10.22□□□□□ -0.77
HDGFL3-203ENST00000563404 IGIPA6NJ69 53 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms