RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PPBPP02775 128 aa4.71□□□□□ -1.66
SCFD1-222ENST00000556768 RPL37AP61513 92 aaKnown RBP4.71□□□□□ -1.66
SCFD1-222ENST00000556768 HBBP68871 147 aa4.71□□□□□ -1.66
SCFD1-222ENST00000556768 URB1-AS1Q96HZ7 61 aa4.71□□□□□ -1.66
SCFD1-222ENST00000556768 CDC42SE2Q9NRR3 84 aa4.71□□□□□ -1.66
SCFD1-222ENST00000556768 LINC00474Q9P2X8 69 aa4.71□□□□□ -1.66
SCFD1-222ENST00000556768 CSDC2Q9Y534 153 aaKnown RBP4.71□□□□□ -1.66
SCFD1-222ENST00000556768 TRBV24-1A0A075B6N3 115 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 IGHV1-58A0A0C4DH39 117 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 C9JQL5 133 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 SMKR1H3BMG3 65 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 GAS8-AS1O95177 125 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 RAB5AP20339 215 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 MRPL51Q4U2R6 128 aaKnown RBP4.7□□□□□ -1.66
SCFD1-222ENST00000556768 HIGD2BQ4VC39 106 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 CD164L2Q6UWJ8 174 aa4.7□□□□□ -1.66
SCFD1-222ENST00000556768 COX6A2Q02221 97 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 MAJINQ3KP22 176 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 MRPL54Q6P161 138 aaKnown RBP4.69□□□□□ -1.66
SCFD1-222ENST00000556768 ATP5L2Q7Z4Y8 100 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 C15orf56Q8N910 161 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 C7orf33Q8WU49 177 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 GVQW2A0A096LPI5 108 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-222ENST00000556768 COX7A2LO14548 114 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 MT-ND4LP03901 98 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 SLPIP03973 132 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 NRACQ8N912 160 aa4.69□□□□□ -1.66
SCFD1-222ENST00000556768 A0A087WYN8 130 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 TRAV13-1A0A0B4J241 112 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 KRTAP29-1A8MX34 341 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-222ENST00000556768 D6R8Y8 96 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 PHOX2AO14813 284 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 APOMO95445 188 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 RPL32P62910 135 aaKnown RBP4.68□□□□□ -1.66
SCFD1-222ENST00000556768 C10orf25Q5T742 122 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 ORMDL3Q8N138 153 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 UBE2D4Q9Y2X8 147 aa4.68□□□□□ -1.66
SCFD1-222ENST00000556768 IGKV2-24A0A0C4DH68 120 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 OXTP01178 125 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 CIRBPQ14011 172 aaKnown RBP4.67□□□□□ -1.66
SCFD1-222ENST00000556768 TMEM136Q6ZRR5 245 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 SPACA4Q8TDM5 124 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 CARD19Q96LW7 228 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 TIMM21Q9BVV7 248 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 SYCNQ0VAF6 134 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 PRSS3P2Q8NHM4 247 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 MPLKIPQ8TAP9 179 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 SMIM2Q9BVW6 85 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 SPANXA1Q9NS26 97 aa4.67□□□□□ -1.66
SCFD1-222ENST00000556768 PANO1I0J062 215 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 ATP6V1G1O75348 118 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 CHTF8P0CG12 524 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 IFI27P40305 119 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-222ENST00000556768 STPG4Q8N801 248 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 PRELID3AQ96N28 172 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 PLAC8Q9NZF1 115 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 LAMTOR2Q9Y2Q5 125 aa4.66□□□□□ -1.66
SCFD1-222ENST00000556768 A0A1B0GXF2 115 aa4.65□□□□□ -1.66
SCFD1-222ENST00000556768 RNASE13Q5GAN3 156 aaKnown RBP4.65□□□□□ -1.66
SCFD1-222ENST00000556768 CAMK2N2Q96S95 79 aa4.65□□□□□ -1.66
SCFD1-222ENST00000556768 IGLV4-69A0A075B6H9 119 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 A0A0U1RRA0 63 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 NPYP01303 97 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 G0S2P27469 103 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 RPL39P62891 51 aaKnown RBP4.65□□□□□ -1.67
SCFD1-222ENST00000556768 C5orf38Q86SI9 138 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 LINC00526Q96FQ7 95 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 MAP1LC3AQ9H492 121 aa4.65□□□□□ -1.67
SCFD1-222ENST00000556768 LOC107984640A0A0U1RRK4 108 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 LOC389332A0A1B0GUA5 103 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 IFITM10A6NMD0 228 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 KRTAP10-4P60372 401 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-222ENST00000556768 MRPS36P82909 103 aaKnown RBP4.64□□□□□ -1.67
SCFD1-222ENST00000556768 Q6ZN92 141 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 Q6ZRU5 148 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 Q6ZUT4 128 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 C2orf48Q96LS8 159 aa4.64□□□□□ -1.67
SCFD1-222ENST00000556768 TGIF2-C20orf24A0A0A6YYL0 155 aa4.63□□□□□ -1.67
SCFD1-222ENST00000556768 CLLU1Q5K131 121 aa4.63□□□□□ -1.67
SCFD1-222ENST00000556768 OR10D4PQ8NGN7 298 aa4.63□□□□□ -1.67
SCFD1-222ENST00000556768 IMMP2LQ96T52 175 aa4.63□□□□□ -1.67
SCFD1-222ENST00000556768 C2orf88Q9BSF0 95 aa4.63□□□□□ -1.67
SCFD1-222ENST00000556768 LRP1Q07954 4544 aaKnown RBP4.63□□□□□ -1.67
SCFD1-222ENST00000556768 A0A096LNI7 61 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 K7EMI3 77 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 SPAG11BQ08648 103 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 ORMDL2Q53FV1 153 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 UQCC3Q6UW78 93 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 TEX43Q6ZNM6 134 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 TMEM141Q96I45 108 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 CYSLTR1Q9Y271 337 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 PYGO1Q9Y3Y4 419 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 S100PP25815 95 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 ORAOV1Q8WV07 137 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 ALKBH7Q9BT30 221 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-222ENST00000556768 VCX2Q9H322 139 aa4.62□□□□□ -1.67
SCFD1-222ENST00000556768 NXT2Q9NPJ8 142 aaKnown RBP4.62□□□□□ -1.67
SCFD1-222ENST00000556768 IGHV3OR16-9A0A0B4J2B5 98 aa4.61□□□□□ -1.67
SCFD1-222ENST00000556768 IGLV5-39A0A0G2JS06 123 aa4.61□□□□□ -1.67
SCFD1-222ENST00000556768 NDUFA1O15239 70 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms