RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SPINK6Q6UWN8 80 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 FAM231DQ6ZW35 169 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 SMIM15Q7Z3B0 74 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 MRPL52Q86TS9 123 aaKnown RBP6.2□□□□□ -1.42
SCFD1-220ENST00000556486 RNASE7Q9H1E1 156 aaKnown RBP6.2□□□□□ -1.42
SCFD1-220ENST00000556486 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-220ENST00000556486 IGHV1-58A0A0C4DH39 117 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 IGKV3OR2-268A0A0C4DH90 116 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 LINC00959A0A1B0GUT2 108 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 IGKV2-29A2NJV5 120 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-220ENST00000556486 TMEM250H0YL14 139 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 I3L3M4 83 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 RNASEKQ6P5S7 137 aaKnown RBP6.19□□□□□ -1.42
SCFD1-220ENST00000556486 SLC51BQ86UW2 128 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 FAM218AQ96MZ4 157 aa6.19□□□□□ -1.42
SCFD1-220ENST00000556486 TRBV27A0A0K0K1C4 114 aa6.18□□□□□ -1.42
SCFD1-220ENST00000556486 TCTE3Q8IZS6 198 aa6.18□□□□□ -1.42
SCFD1-220ENST00000556486 BTF3L4Q96K17 158 aa6.18□□□□□ -1.42
SCFD1-220ENST00000556486 A8MWL6 223 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 CCL25O15444 150 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 XCL1P47992 114 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 POLR2KP53803 58 aaKnown RBP6.17□□□□□ -1.42
SCFD1-220ENST00000556486 REG3GQ6UW15 175 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 MRAP2Q96G30 205 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 TMEM101Q96IK0 257 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 CARD19Q96LW7 228 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 CDC42SE2Q9NRR3 84 aa6.17□□□□□ -1.42
SCFD1-220ENST00000556486 PMCHP20382 165 aa6.16□□□□□ -1.42
SCFD1-220ENST00000556486 Q6ZRP5 223 aa6.16□□□□□ -1.42
SCFD1-220ENST00000556486 TMEM191AQ9H0A3 160 aa6.16□□□□□ -1.42
SCFD1-220ENST00000556486 CSDC2Q9Y534 153 aaKnown RBP6.16□□□□□ -1.42
SCFD1-220ENST00000556486 GATCO43716 136 aaKnown RBP6.15□□□□□ -1.42
SCFD1-220ENST00000556486 SYCNQ0VAF6 134 aa6.15□□□□□ -1.42
SCFD1-220ENST00000556486 SS18Q15532 418 aa6.15□□□□□ -1.42
SCFD1-220ENST00000556486 ZNF664Q8N3J9 261 aa6.15□□□□□ -1.42
SCFD1-220ENST00000556486 ST20Q9HBF5 79 aa6.15□□□□□ -1.42
SCFD1-220ENST00000556486 A0A1B0GUT8 65 aa6.14□□□□□ -1.43
SCFD1-220ENST00000556486 C7orf77A4D0Y5 90 aa6.14□□□□□ -1.43
SCFD1-220ENST00000556486 LINC00526Q96FQ7 95 aa6.14□□□□□ -1.43
SCFD1-220ENST00000556486 TMEM242Q9NWH2 141 aa6.14□□□□□ -1.43
SCFD1-220ENST00000556486 LOC107984640A0A0U1RRK4 108 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 HIGD1CA8MV81 97 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 C1orf196B1AJZ1 125 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 SMIM1B2RUZ4 78 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 RAB4AP20338 218 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 TSKUQ8WUA8 353 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 ISOC2Q96AB3 205 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 BORCS7Q96B45 105 aa6.13□□□□□ -1.43
SCFD1-220ENST00000556486 IGLV4-69A0A075B6H9 119 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 PCP4L1A6NKN8 68 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 APOMO95445 188 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 PPP1R17O96001 155 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 SMAGPQ0VAQ4 97 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 LINC01551Q86U37 167 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 NUP35Q8NFH5 326 aa6.12□□□□□ -1.43
SCFD1-220ENST00000556486 COX7A2LO14548 114 aa6.11□□□□□ -1.43
SCFD1-220ENST00000556486 TIMM21Q9BVV7 248 aa6.11□□□□□ -1.43
SCFD1-220ENST00000556486 OSTCQ9NRP0 149 aa6.11□□□□□ -1.43
SCFD1-220ENST00000556486 UBE2D4Q9Y2X8 147 aa6.11□□□□□ -1.43
SCFD1-220ENST00000556486 A0A1W2PNN7 141 aa6.1□□□□□ -1.43
SCFD1-220ENST00000556486 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-220ENST00000556486 AMN1Q8IY45 258 aa6.1□□□□□ -1.43
SCFD1-220ENST00000556486 PRAC1Q96KF2 57 aa6.1□□□□□ -1.43
SCFD1-220ENST00000556486 SMIM7Q9BQ49 75 aa6.1□□□□□ -1.43
SCFD1-220ENST00000556486 A0A0U1RQV1 116 aa6.09□□□□□ -1.43
SCFD1-220ENST00000556486 PPP1R2P9O14990 202 aa6.09□□□□□ -1.43
SCFD1-220ENST00000556486 RPL32P62910 135 aaKnown RBP6.09□□□□□ -1.43
SCFD1-220ENST00000556486 PRR4Q16378 134 aa6.09□□□□□ -1.43
SCFD1-220ENST00000556486 KIR2DL4Q99706 377 aa6.09□□□□□ -1.43
SCFD1-220ENST00000556486 PSORS1C2Q9UIG4 136 aa6.09□□□□□ -1.43
SCFD1-220ENST00000556486 TRBV24-1A0A075B6N3 115 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 FCER1GP30273 86 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 C9orf116Q5BN46 136 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-220ENST00000556486 ALKAL2Q6UX46 152 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 OR10D4PQ8NGN7 298 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 CAMK2N2Q96S95 79 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 C20orf78Q9BR46 151 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 MRPL35Q9NZE8 188 aaKnown RBP6.08□□□□□ -1.44
SCFD1-220ENST00000556486 V9GYV3 84 aa6.08□□□□□ -1.44
SCFD1-220ENST00000556486 IGHV3OR16-9A0A0B4J2B5 98 aa6.07□□□□□ -1.44
SCFD1-220ENST00000556486 LINC00862A6NCI5 91 aa6.07□□□□□ -1.44
SCFD1-220ENST00000556486 TCAPO15273 167 aa6.07□□□□□ -1.44
SCFD1-220ENST00000556486 FAM74A3Q4VXF1 159 aa6.07□□□□□ -1.44
SCFD1-220ENST00000556486 TRAV13-1A0A0B4J241 112 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 ZNF727A8MUV8 499 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 SMKR1H3BMG3 65 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 MT-ND6P03923 174 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 TLX1NBP0CAT3 122 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 SPAG11BQ08648 103 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 FAM104BQ5XKR9 115 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 Q6ZUT4 128 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 FAM104AQ969W3 186 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 NAT8BQ9UHF3 227 aa6.06□□□□□ -1.44
SCFD1-220ENST00000556486 A0A1B0GW15 77 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 IGKV2-30P06310 120 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 SRP19P09132 144 aaKnown RBP6.05□□□□□ -1.44
SCFD1-220ENST00000556486 CEBPGP53567 150 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 MRPS36P82909 103 aaKnown RBP6.05□□□□□ -1.44
SCFD1-220ENST00000556486 MRPL51Q4U2R6 128 aaKnown RBP6.05□□□□□ -1.44
SCFD1-220ENST00000556486 RNASE13Q5GAN3 156 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms