RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 A0A087WZ39 114 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 CCL25O15444 150 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 APOMO95445 188 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 MRPL51Q4U2R6 128 aaKnown RBP7.07□□□□□ -1.28
PTCH1-222ENST00000551425 KRTAP11-1Q8IUC1 163 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 OR5A1Q8NGJ0 315 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 GNB1LQ9BYB4 327 aa7.07□□□□□ -1.28
PTCH1-222ENST00000551425 IGLV4-69A0A075B6H9 119 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 TGIF2-C20orf24A0A0A6YYL0 155 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 LINC00959A0A1B0GUT2 108 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.06□□□□□ -1.28
PTCH1-222ENST00000551425 H7C423 109 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 PPP1R17O96001 155 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 PPBPP02775 128 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 CKS2P33552 79 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 RNASEKQ6P5S7 137 aaKnown RBP7.06□□□□□ -1.28
PTCH1-222ENST00000551425 TMEM136Q6ZRR5 245 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 CBLN2Q8IUK8 224 aa7.06□□□□□ -1.28
PTCH1-222ENST00000551425 YPEL4Q96NS1 127 aa7.05□□□□□ -1.28
PTCH1-222ENST00000551425 MUC17Q685J3 4493 aa7.05□□□□□ -1.28
PTCH1-222ENST00000551425 TRBV6-5A0A0K0K1A5 114 aa7.04□□□□□ -1.28
PTCH1-222ENST00000551425 APCSP02743 223 aa7.04□□□□□ -1.28
PTCH1-222ENST00000551425 ZNF25P17030 456 aaPredicted RBP7.04□□□□□ -1.28
PTCH1-222ENST00000551425 RPL18AQ02543 176 aaKnown RBP7.04□□□□□ -1.28
PTCH1-222ENST00000551425 CD164L2Q6UWJ8 174 aa7.04□□□□□ -1.28
PTCH1-222ENST00000551425 ORMDL3Q8N138 153 aa7.04□□□□□ -1.28
PTCH1-222ENST00000551425 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.03□□□□□ -1.28
PTCH1-222ENST00000551425 IGKV2-29A2NJV5 120 aaPredicted RBP7.03□□□□□ -1.28
PTCH1-222ENST00000551425 D6R8Y8 96 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 SMKR1H3BMG3 65 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 NCR2O95944 276 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 LINC01547P58512 204 aaPredicted RBP7.03□□□□□ -1.28
PTCH1-222ENST00000551425 TPRXLQ17RH7 258 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 RPL39LQ96EH5 51 aaKnown RBP7.03□□□□□ -1.28
PTCH1-222ENST00000551425 CAMK2N2Q96S95 79 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 CDIP1Q9H305 208 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 ST20Q9HBF5 79 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 TRAPPC1Q9Y5R8 145 aa7.03□□□□□ -1.28
PTCH1-222ENST00000551425 SCO1O75880 301 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 FABP9Q0Z7S8 132 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 NRACQ8N912 160 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 C2orf48Q96LS8 159 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 PRELID3AQ96N28 172 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 C20orf78Q9BR46 151 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 MRPL18Q9H0U6 180 aaKnown RBP7.02□□□□□ -1.29
PTCH1-222ENST00000551425 LAMTOR2Q9Y2Q5 125 aa7.02□□□□□ -1.29
PTCH1-222ENST00000551425 SDHAF1A6NFY7 115 aa7.01□□□□□ -1.29
PTCH1-222ENST00000551425 TNFRSF6BO95407 300 aa7.01□□□□□ -1.29
PTCH1-222ENST00000551425 PMCHP20382 165 aa7.01□□□□□ -1.29
PTCH1-222ENST00000551425 SUMO2P61956 95 aaKnown RBP7.01□□□□□ -1.29
PTCH1-222ENST00000551425 SS18Q15532 418 aa7.01□□□□□ -1.29
PTCH1-222ENST00000551425 RNF151Q2KHN1 245 aa7.01□□□□□ -1.29
PTCH1-222ENST00000551425 COLCA2A8K830 154 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 I3L3M4 83 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 VCYO14598 125 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 ESDP10768 282 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 POLR2KP53803 58 aaKnown RBP7□□□□□ -1.29
PTCH1-222ENST00000551425 KIAA1644Q3SXP7 199 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 TMEM101Q96IK0 257 aa7□□□□□ -1.29
PTCH1-222ENST00000551425 TRBV27A0A0K0K1C4 114 aa6.99□□□□□ -1.29
PTCH1-222ENST00000551425 FAM168BA1KXE4 195 aa6.99□□□□□ -1.29
PTCH1-222ENST00000551425 NPYP01303 97 aa6.99□□□□□ -1.29
PTCH1-222ENST00000551425 MALP21145 153 aa6.99□□□□□ -1.29
PTCH1-222ENST00000551425 RPL32P62910 135 aaKnown RBP6.99□□□□□ -1.29
PTCH1-222ENST00000551425 OPRPNQ99935 248 aaPredicted RBP6.99□□□□□ -1.29
PTCH1-222ENST00000551425 MAP1LC3AQ9H492 121 aa6.99□□□□□ -1.29
PTCH1-222ENST00000551425 PRSS47A8MTI9 375 aa6.98□□□□□ -1.29
PTCH1-222ENST00000551425 COX7A2LO14548 114 aa6.98□□□□□ -1.29
PTCH1-222ENST00000551425 TCAPO15273 167 aa6.98□□□□□ -1.29
PTCH1-222ENST00000551425 RAB5AP20339 215 aa6.98□□□□□ -1.29
PTCH1-222ENST00000551425 KIR2DL4Q99706 377 aa6.98□□□□□ -1.29
PTCH1-222ENST00000551425 ALKBH7Q9BT30 221 aaPredicted RBP6.98□□□□□ -1.29
PTCH1-222ENST00000551425 LOC389332A0A1B0GUA5 103 aa6.97□□□□□ -1.29
PTCH1-222ENST00000551425 FAM19A5Q7Z5A7 132 aaPredicted RBP6.97□□□□□ -1.29
PTCH1-222ENST00000551425 SMIM2Q9BVW6 85 aa6.97□□□□□ -1.29
PTCH1-222ENST00000551425 CDC42SE2Q9NRR3 84 aa6.97□□□□□ -1.29
PTCH1-222ENST00000551425 A0A087X002 238 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 ZNF861PO60384 105 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 TRGC2P03986 189 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 FCER1GP30273 86 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 KRTAP7-1Q8IUC3 87 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 RETNLBQ9BQ08 111 aa6.96□□□□□ -1.3
PTCH1-222ENST00000551425 NXT2Q9NPJ8 142 aaKnown RBP6.96□□□□□ -1.3
PTCH1-222ENST00000551425 C1orf196B1AJZ1 125 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 TSHBP01222 138 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 CRYGAP11844 174 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 UBE2BP63146 152 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 MRPL52Q86TS9 123 aaKnown RBP6.95□□□□□ -1.3
PTCH1-222ENST00000551425 Q8N8P6 123 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 TYMSOSQ8TAI1 123 aa6.95□□□□□ -1.3
PTCH1-222ENST00000551425 MRPL35Q9NZE8 188 aaKnown RBP6.95□□□□□ -1.3
PTCH1-222ENST00000551425 IGLV7-46A0A075B6I9 117 aa6.94□□□□□ -1.3
PTCH1-222ENST00000551425 K7EMI3 77 aa6.94□□□□□ -1.3
PTCH1-222ENST00000551425 M0QXV9 152 aa6.94□□□□□ -1.3
PTCH1-222ENST00000551425 TLX1NBP0CAT3 122 aa6.94□□□□□ -1.3
PTCH1-222ENST00000551425 IFI27P40305 119 aaPredicted RBP6.94□□□□□ -1.3
PTCH1-222ENST00000551425 F8WDY8 70 aa6.93□□□□□ -1.3
PTCH1-222ENST00000551425 RAB5BP61020 215 aa6.93□□□□□ -1.3
PTCH1-222ENST00000551425 SPAG11BQ08648 103 aa6.93□□□□□ -1.3
PTCH1-222ENST00000551425 SMAGPQ0VAQ4 97 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms