RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 GNB1LQ9BYB4 327 aa9.57□□□□□ -0.88
UBE3B-212ENST00000540230 HERC1Q15751 4861 aa9.57□□□□□ -0.88
UBE3B-212ENST00000540230 A0A087WYN8 130 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 IGHV3OR16-9A0A0B4J2B5 98 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 ZNF561-AS1K7EIQ3 104 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 CARD19Q96LW7 228 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 CYSLTR1Q9Y271 337 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 LRP1Q07954 4544 aaKnown RBP9.56□□□□□ -0.88
UBE3B-212ENST00000540230 A0A096LNI7 61 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 IGKV2-24A0A0C4DH68 120 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 APOC3P02656 99 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 ORMDL2Q53FV1 153 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 LINC00173Q6ZV60 143 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 TMEM141Q96I45 108 aa9.56□□□□□ -0.88
UBE3B-212ENST00000540230 NXT2Q9NPJ8 142 aaKnown RBP9.56□□□□□ -0.88
UBE3B-212ENST00000540230 FAT3Q8TDW7 4589 aa9.55□□□□□ -0.88
UBE3B-212ENST00000540230 SYCNQ0VAF6 134 aa9.55□□□□□ -0.88
UBE3B-212ENST00000540230 Q6ZRU5 148 aa9.55□□□□□ -0.88
UBE3B-212ENST00000540230 ALKBH7Q9BT30 221 aaPredicted RBP9.55□□□□□ -0.88
UBE3B-212ENST00000540230 TGIF2-C20orf24A0A0A6YYL0 155 aa9.54□□□□□ -0.88
UBE3B-212ENST00000540230 LINC00242Q5T6M2 205 aa9.54□□□□□ -0.88
UBE3B-212ENST00000540230 MRPL18Q9H0U6 180 aaKnown RBP9.54□□□□□ -0.88
UBE3B-212ENST00000540230 IGIPA6NJ69 53 aa9.53□□□□□ -0.88
UBE3B-212ENST00000540230 K7EMI3 77 aa9.53□□□□□ -0.88
UBE3B-212ENST00000540230 SPAG11BQ08648 103 aa9.53□□□□□ -0.88
UBE3B-212ENST00000540230 MAJINQ3KP22 176 aa9.53□□□□□ -0.88
UBE3B-212ENST00000540230 DPH3Q96FX2 82 aa9.53□□□□□ -0.88
UBE3B-212ENST00000540230 UBE2D1P51668 147 aa9.52□□□□□ -0.88
UBE3B-212ENST00000540230 RPL37AP61513 92 aaKnown RBP9.52□□□□□ -0.88
UBE3B-212ENST00000540230 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.88
UBE3B-212ENST00000540230 ORAOV1Q8WV07 137 aa9.52□□□□□ -0.88
UBE3B-212ENST00000540230 AMELXQ99217 191 aa9.52□□□□□ -0.88
UBE3B-212ENST00000540230 PLAC8Q9NZF1 115 aa9.52□□□□□ -0.88
UBE3B-212ENST00000540230 APOMO95445 188 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 FABP9Q0Z7S8 132 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 CAMK2N2Q96S95 79 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 MT-ND6P03923 174 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 HNRNPA3P51991 378 aaKnown RBP9.51□□□□□ -0.89
UBE3B-212ENST00000540230 COX19Q49B96 90 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 TOMM6Q96B49 74 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 C2orf48Q96LS8 159 aa9.51□□□□□ -0.89
UBE3B-212ENST00000540230 A0A0J9YXV3 536 aa9.5□□□□□ -0.89
UBE3B-212ENST00000540230 SVBPQ8N300 66 aa9.5□□□□□ -0.89
UBE3B-212ENST00000540230 STPG4Q8N801 248 aa9.5□□□□□ -0.89
UBE3B-212ENST00000540230 OR10D4PQ8NGN7 298 aa9.5□□□□□ -0.89
UBE3B-212ENST00000540230 A0A087WZ39 114 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 LINC01546A6NGU7 62 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 SNAPINO95295 136 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 Q6ZN92 141 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 C2orf88Q9BSF0 95 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 VCX2Q9H322 139 aa9.49□□□□□ -0.89
UBE3B-212ENST00000540230 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.48□□□□□ -0.89
UBE3B-212ENST00000540230 NDUFA5Q16718 116 aa9.48□□□□□ -0.89
UBE3B-212ENST00000540230 C10orf25Q5T742 122 aa9.48□□□□□ -0.89
UBE3B-212ENST00000540230 TIMM17AQ99595 171 aa9.48□□□□□ -0.89
UBE3B-212ENST00000540230 DMBT1Q9UGM3 2413 aaPredicted RBP9.48□□□□□ -0.89
UBE3B-212ENST00000540230 NPSP0C0P6 89 aa9.47□□□□□ -0.89
UBE3B-212ENST00000540230 PTTG1IPP53801 180 aa9.47□□□□□ -0.89
UBE3B-212ENST00000540230 KIAA0087Q14695 138 aa9.47□□□□□ -0.89
UBE3B-212ENST00000540230 LOC107984640A0A0U1RRK4 108 aa9.46□□□□□ -0.89
UBE3B-212ENST00000540230 GAGE2BQ13066 116 aa9.46□□□□□ -0.89
UBE3B-212ENST00000540230 URB1-AS1Q96HZ7 61 aa9.46□□□□□ -0.89
UBE3B-212ENST00000540230 YPEL4Q96NS1 127 aa9.46□□□□□ -0.89
UBE3B-212ENST00000540230 TRAPPC1Q9Y5R8 145 aa9.46□□□□□ -0.89
UBE3B-212ENST00000540230 UNQ6190/PRO20217Q6UXQ8 127 aa9.46□□□□□ -0.9
UBE3B-212ENST00000540230 ERASQ7Z444 233 aa9.46□□□□□ -0.9
UBE3B-212ENST00000540230 FAM19A3Q7Z5A8 133 aa9.46□□□□□ -0.9
UBE3B-212ENST00000540230 SCGB3A1Q96QR1 104 aa9.46□□□□□ -0.9
UBE3B-212ENST00000540230 G0S2P27469 103 aa9.45□□□□□ -0.9
UBE3B-212ENST00000540230 FA2HQ7L5A8 372 aa9.45□□□□□ -0.9
UBE3B-212ENST00000540230 C18orf32Q8TCD1 76 aa9.45□□□□□ -0.9
UBE3B-212ENST00000540230 MRPL35Q9NZE8 188 aaKnown RBP9.45□□□□□ -0.9
UBE3B-212ENST00000540230 C6orf48Q9UBA6 75 aa9.45□□□□□ -0.9
UBE3B-212ENST00000540230 PKIGQ9Y2B9 76 aa9.45□□□□□ -0.9
UBE3B-212ENST00000540230 A0A096LNJ9 63 aa9.44□□□□□ -0.9
UBE3B-212ENST00000540230 NDUFA1O15239 70 aa9.44□□□□□ -0.9
UBE3B-212ENST00000540230 RPL18AQ02543 176 aaKnown RBP9.44□□□□□ -0.9
UBE3B-212ENST00000540230 LINC00474Q9P2X8 69 aa9.44□□□□□ -0.9
UBE3B-212ENST00000540230 A0A1W2PNN7 141 aa9.43□□□□□ -0.9
UBE3B-212ENST00000540230 RNF151Q2KHN1 245 aa9.43□□□□□ -0.9
UBE3B-212ENST00000540230 C2orf82Q6UX34 121 aa9.43□□□□□ -0.9
UBE3B-212ENST00000540230 SMCO4Q9NRQ5 59 aa9.43□□□□□ -0.9
UBE3B-212ENST00000540230 CDKN2A-AS1Q9UH64 79 aa9.43□□□□□ -0.9
UBE3B-212ENST00000540230 PAPPA-AS1Q5QFB9 102 aa9.42□□□□□ -0.9
UBE3B-212ENST00000540230 SLC7A5P1Q8MH63 180 aa9.42□□□□□ -0.9
UBE3B-212ENST00000540230 LINC01561Q8N1V8 128 aa9.42□□□□□ -0.9
UBE3B-212ENST00000540230 KRTAP29-1A8MX34 341 aaPredicted RBP9.41□□□□□ -0.9
UBE3B-212ENST00000540230 CBLN2Q8IUK8 224 aa9.41□□□□□ -0.9
UBE3B-212ENST00000540230 C7orf33Q8WU49 177 aa9.41□□□□□ -0.9
UBE3B-212ENST00000540230 F8WDY8 70 aa9.41□□□□□ -0.9
UBE3B-212ENST00000540230 HERVK_113P63121 156 aa9.41□□□□□ -0.9
UBE3B-212ENST00000540230 Q6ZRP5 223 aa9.41□□□□□ -0.9
UBE3B-212ENST00000540230 PMCHL1Q16048 86 aa9.4□□□□□ -0.91
UBE3B-212ENST00000540230 C9orf116Q5BN46 136 aaPredicted RBP9.4□□□□□ -0.91
UBE3B-212ENST00000540230 TOMM7Q9P0U1 55 aa9.4□□□□□ -0.91
UBE3B-212ENST00000540230 J3QL48 77 aa9.39□□□□□ -0.91
UBE3B-212ENST00000540230 LINC00614P0C842 121 aa9.39□□□□□ -0.91
UBE3B-212ENST00000540230 CST9LQ9H4G1 147 aa9.39□□□□□ -0.91
UBE3B-212ENST00000540230 GEMIN7Q9H840 131 aaKnown RBP9.39□□□□□ -0.91
UBE3B-212ENST00000540230 LINC01549A6NIU2 74 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms