RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ALKBH7Q9BT30 221 aaPredicted RBP7.1□□□□□ -1.27
CLSTN3-209ENST00000539982 D6R8Y8 96 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 CKS2P33552 79 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 PTTG1IPP53801 180 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 NDUFA6P56556 154 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 AMMECR1LQ6DCA0 310 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 ORMDL3Q8N138 153 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 PRR26Q8N8Z3 221 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 LINC00526Q96FQ7 95 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 MRAP2Q96G30 205 aa7.09□□□□□ -1.27
CLSTN3-209ENST00000539982 FAT4Q6V0I7 4981 aa7.08□□□□□ -1.28
CLSTN3-209ENST00000539982 IGHV1-58A0A0C4DH39 117 aa7.08□□□□□ -1.28
CLSTN3-209ENST00000539982 S100A6P06703 90 aa7.08□□□□□ -1.28
CLSTN3-209ENST00000539982 PRELID3AQ96N28 172 aa7.08□□□□□ -1.28
CLSTN3-209ENST00000539982 LAMTOR2Q9Y2Q5 125 aa7.08□□□□□ -1.28
CLSTN3-209ENST00000539982 A0A1W2PNN7 141 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 SMKR1H3BMG3 65 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 H7C423 109 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 NCR2O95944 276 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 SYCNQ0VAF6 134 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 RNASEKQ6P5S7 137 aaKnown RBP7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 C18orf32Q8TCD1 76 aa7.07□□□□□ -1.28
CLSTN3-209ENST00000539982 LOC107984640A0A0U1RRK4 108 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 ZNF561-AS1K7EIQ3 104 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 PPP1R17O96001 155 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 NPYP01303 97 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 XCL1P47992 114 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 GAGE2BQ13066 116 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 PRR4Q16378 134 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 C1orf137Q5JT78 98 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 COA6Q5JTJ3 125 aaKnown RBP7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 LCE2AQ5TA79 106 aaPredicted RBP7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 BAGE3Q86Y29 109 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 OR5A1Q8NGJ0 315 aa7.06□□□□□ -1.28
CLSTN3-209ENST00000539982 CCL25O15444 150 aa7.05□□□□□ -1.28
CLSTN3-209ENST00000539982 TNFRSF6BO95407 300 aa7.05□□□□□ -1.28
CLSTN3-209ENST00000539982 FGF6P10767 208 aa7.05□□□□□ -1.28
CLSTN3-209ENST00000539982 NRACQ8N912 160 aa7.05□□□□□ -1.28
CLSTN3-209ENST00000539982 DIRC1Q969H9 104 aa7.05□□□□□ -1.28
CLSTN3-209ENST00000539982 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 LINC00959A0A1B0GUT2 108 aa7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 IGKV2-29A2NJV5 120 aaPredicted RBP7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 C5orf52A6NGY3 159 aa7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 SNRPEP62304 92 aaKnown RBP7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 C9orf116Q5BN46 136 aaPredicted RBP7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 MAP1LC3AQ9H492 121 aa7.04□□□□□ -1.28
CLSTN3-209ENST00000539982 IGLV1-50A0A075B6I6 118 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 LOC389332A0A1B0GUA5 103 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 PRSS47A8MTI9 375 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 SERF1AO75920 110 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 IGLV7-43P04211 117 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 ZNF25P17030 456 aaPredicted RBP7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 RPL39LQ96EH5 51 aaKnown RBP7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 C20orf78Q9BR46 151 aa7.03□□□□□ -1.28
CLSTN3-209ENST00000539982 LINC00614P0C842 121 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 ESDP10768 282 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 LINC00310P59036 64 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 SUMO2P61956 95 aaKnown RBP7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 SS18Q15532 418 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 CD164L2Q6UWJ8 174 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 FA2HQ7L5A8 372 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 PHF5AQ7RTV0 110 aaKnown RBP7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 CHCHD1Q96BP2 118 aaKnown RBP7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 TMEM101Q96IK0 257 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 ST20Q9HBF5 79 aa7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 NXT2Q9NPJ8 142 aaKnown RBP7.02□□□□□ -1.29
CLSTN3-209ENST00000539982 IGLV4-69A0A075B6H9 119 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 TRBV6-5A0A0K0K1A5 114 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 H0Y9J4 135 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 NUPR1O60356 82 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 PMCHP20382 165 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 S100A2P29034 98 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 IFI27P40305 119 aaPredicted RBP7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 HIST3H2BBQ8N257 126 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 Q8N8P6 123 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 URB1-AS1Q96HZ7 61 aa7.01□□□□□ -1.29
CLSTN3-209ENST00000539982 HSBP1O75506 76 aa7□□□□□ -1.29
CLSTN3-209ENST00000539982 APOMO95445 188 aa7□□□□□ -1.29
CLSTN3-209ENST00000539982 RPL32P62910 135 aaKnown RBP7□□□□□ -1.29
CLSTN3-209ENST00000539982 PDZD11Q5EBL8 140 aa7□□□□□ -1.29
CLSTN3-209ENST00000539982 SMIM2Q9BVW6 85 aa7□□□□□ -1.29
CLSTN3-209ENST00000539982 LINC01546A6NGU7 62 aa6.99□□□□□ -1.29
CLSTN3-209ENST00000539982 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.99□□□□□ -1.29
CLSTN3-209ENST00000539982 VCYO14598 125 aa6.99□□□□□ -1.29
CLSTN3-209ENST00000539982 CAMK2N2Q96S95 79 aa6.99□□□□□ -1.29
CLSTN3-209ENST00000539982 A0A087WZ39 114 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 LOC105371267A0A1B0GV96 52 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 SDHAF1A6NFY7 115 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 IFITM10A6NMD0 228 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 I3L3M4 83 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 MALP21145 153 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 POLR2KP53803 58 aaKnown RBP6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 TMEM18Q96B42 140 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 PACRGQ96M98 296 aaPredicted RBP6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 CDC42SE2Q9NRR3 84 aa6.98□□□□□ -1.29
CLSTN3-209ENST00000539982 TRBV27A0A0K0K1C4 114 aa6.97□□□□□ -1.29
CLSTN3-209ENST00000539982 K7EMI3 77 aa6.97□□□□□ -1.29
CLSTN3-209ENST00000539982 RPL13AP40429 203 aaKnown RBP6.97□□□□□ -1.29
CLSTN3-209ENST00000539982 UBE2D1P51668 147 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms