RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RAB5AP20339 215 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 PTTG1IPP53801 180 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 KRTAP10-8P60410 259 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 SRSF9Q13242 221 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS28-214ENST00000531032 ODF1Q14990 250 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 REG3GQ6UW15 175 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 Q6ZRP5 223 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 TMEM136Q6ZRR5 245 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 PRELID3AQ96N28 172 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 SEC11CQ9BY50 192 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 CSDC2Q9Y534 153 aaKnown RBP7.04□□□□□ -1.28
VPS28-214ENST00000531032 COX7A2LO14548 114 aa7.03□□□□□ -1.28
VPS28-214ENST00000531032 TIMM21Q9BVV7 248 aa7.03□□□□□ -1.28
VPS28-214ENST00000531032 SPANXA1Q9NS26 97 aa7.03□□□□□ -1.28
VPS28-214ENST00000531032 CARHSP1Q9Y2V2 147 aaKnown RBP7.03□□□□□ -1.28
VPS28-214ENST00000531032 IGLV4-69A0A075B6H9 119 aa7.02□□□□□ -1.29
VPS28-214ENST00000531032 RPL39P62891 51 aaKnown RBP7.02□□□□□ -1.29
VPS28-214ENST00000531032 MAP1LC3AQ9H492 121 aa7.02□□□□□ -1.29
VPS28-214ENST00000531032 RNF213Q63HN8 5207 aa7.02□□□□□ -1.29
VPS28-214ENST00000531032 LOC107984640A0A0U1RRK4 108 aa7.01□□□□□ -1.29
VPS28-214ENST00000531032 IFITM10A6NMD0 228 aa7.01□□□□□ -1.29
VPS28-214ENST00000531032 APOMO95445 188 aa7.01□□□□□ -1.29
VPS28-214ENST00000531032 IFI27P40305 119 aaPredicted RBP7.01□□□□□ -1.29
VPS28-214ENST00000531032 LAMTOR2Q9Y2Q5 125 aa7.01□□□□□ -1.29
VPS28-214ENST00000531032 LOC389332A0A1B0GUA5 103 aa7□□□□□ -1.29
VPS28-214ENST00000531032 GAGE2BQ13066 116 aa7□□□□□ -1.29
VPS28-214ENST00000531032 CTDSP1Q9GZU7 261 aa7□□□□□ -1.29
VPS28-214ENST00000531032 A0A1W2PNN7 141 aa6.99□□□□□ -1.29
VPS28-214ENST00000531032 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.99□□□□□ -1.29
VPS28-214ENST00000531032 SPAG11BQ08648 103 aa6.99□□□□□ -1.29
VPS28-214ENST00000531032 C5orf38Q86SI9 138 aa6.99□□□□□ -1.29
VPS28-214ENST00000531032 C2orf48Q96LS8 159 aa6.99□□□□□ -1.29
VPS28-214ENST00000531032 CAMK2N2Q96S95 79 aa6.99□□□□□ -1.29
VPS28-214ENST00000531032 MRPS36P82909 103 aaKnown RBP6.98□□□□□ -1.29
VPS28-214ENST00000531032 TGIF2-C20orf24A0A0A6YYL0 155 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 APOC3P02656 99 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 S100PP25815 95 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 C9orf116Q5BN46 136 aaPredicted RBP6.97□□□□□ -1.29
VPS28-214ENST00000531032 Q6ZN92 141 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 IMMP2LQ96T52 175 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 OPRPNQ99935 248 aaPredicted RBP6.97□□□□□ -1.29
VPS28-214ENST00000531032 C2orf88Q9BSF0 95 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 PSORS1C2Q9UIG4 136 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 CYSLTR1Q9Y271 337 aa6.97□□□□□ -1.29
VPS28-214ENST00000531032 RPL18AQ02543 176 aaKnown RBP6.96□□□□□ -1.3
VPS28-214ENST00000531032 RNF151Q2KHN1 245 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 ORMDL2Q53FV1 153 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 TEX43Q6ZNM6 134 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 Q8N8P6 123 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 OR10D4PQ8NGN7 298 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 ORAOV1Q8WV07 137 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 TMEM141Q96I45 108 aa6.96□□□□□ -1.3
VPS28-214ENST00000531032 TRAV9-1A0A075B6T8 112 aa6.95□□□□□ -1.3
VPS28-214ENST00000531032 MT-ND6P03923 174 aa6.95□□□□□ -1.3
VPS28-214ENST00000531032 C2orf66Q6UXQ4 117 aa6.95□□□□□ -1.3
VPS28-214ENST00000531032 FAM104AQ969W3 186 aa6.95□□□□□ -1.3
VPS28-214ENST00000531032 NXT2Q9NPJ8 142 aaKnown RBP6.95□□□□□ -1.3
VPS28-214ENST00000531032 IGLV4-3A0A075B6K6 122 aa6.94□□□□□ -1.3
VPS28-214ENST00000531032 IGHV3OR16-9A0A0B4J2B5 98 aa6.94□□□□□ -1.3
VPS28-214ENST00000531032 NDUFA5Q16718 116 aa6.94□□□□□ -1.3
VPS28-214ENST00000531032 PHF5AQ7RTV0 110 aaKnown RBP6.94□□□□□ -1.3
VPS28-214ENST00000531032 RPS10P5Q9NQ39 176 aa6.94□□□□□ -1.3
VPS28-214ENST00000531032 MRPL35Q9NZE8 188 aaKnown RBP6.94□□□□□ -1.3
VPS28-214ENST00000531032 PYGO1Q9Y3Y4 419 aa6.94□□□□□ -1.3
VPS28-214ENST00000531032 PRSS47A8MTI9 375 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 F8WDY8 70 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 K7EMI3 77 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 NDUFA1O15239 70 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 G0S2P27469 103 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 RHEBQ15382 184 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 KIAA1644Q3SXP7 199 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 C1orf137Q5JT78 98 aa6.93□□□□□ -1.3
VPS28-214ENST00000531032 PAPPA-AS1Q5QFB9 102 aa6.92□□□□□ -1.3
VPS28-214ENST00000531032 SVBPQ8N300 66 aa6.92□□□□□ -1.3
VPS28-214ENST00000531032 VCX2Q9H322 139 aa6.92□□□□□ -1.3
VPS28-214ENST00000531032 SNAPINO95295 136 aa6.91□□□□□ -1.3
VPS28-214ENST00000531032 TLX1NBP0CAT3 122 aa6.91□□□□□ -1.3
VPS28-214ENST00000531032 IGLV7-43P04211 117 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 NPSP0C0P6 89 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 UBE2D1P51668 147 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 COX19Q49B96 90 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 LINC00242Q5T6M2 205 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 C10orf25Q5T742 122 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 DIRC1Q969H9 104 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 YPEL4Q96NS1 127 aa6.9□□□□□ -1.3
VPS28-214ENST00000531032 A0A087WZ39 114 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 FAM168BA1KXE4 195 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 PRSS2P07478 247 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 UNQ6190/PRO20217Q6UXQ8 127 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 KRTAP11-1Q8IUC1 163 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 PACRGQ96M98 296 aaPredicted RBP6.89□□□□□ -1.31
VPS28-214ENST00000531032 GNB1LQ9BYB4 327 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 SMCO4Q9NRQ5 59 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 C6orf48Q9UBA6 75 aa6.89□□□□□ -1.31
VPS28-214ENST00000531032 H0Y9J4 135 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 SEC11AP67812 179 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 FABP9Q0Z7S8 132 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 KIAA0087Q14695 138 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 ZC2HC1BQ5TFG8 222 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 FA2HQ7L5A8 372 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms