RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 Q6ZUT4 128 aa6.67□□□□□ -1.34
VPS28-204ENST00000526054 PACRGQ96M98 296 aaPredicted RBP6.67□□□□□ -1.34
VPS28-204ENST00000526054 LECT2O14960 151 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 HBDP02042 147 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 MRPS36P82909 103 aaKnown RBP6.66□□□□□ -1.34
VPS28-204ENST00000526054 WFDC2Q14508 124 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 KRTAP26-1Q6PEX3 210 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 FAM19A2Q8N3H0 131 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 CHCHD10Q8WYQ3 142 aaPredicted RBP6.66□□□□□ -1.34
VPS28-204ENST00000526054 PYGO1Q9Y3Y4 419 aa6.66□□□□□ -1.34
VPS28-204ENST00000526054 LINC00959A0A1B0GUT2 108 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 GAGE12HA6NDE8 117 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 LINC01549A6NIU2 74 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 USP17L23D6RBM5 183 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 CCL25O15444 150 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 FABP4P15090 132 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 PMCHL1Q16048 86 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 RNASE13Q5GAN3 156 aaKnown RBP6.65□□□□□ -1.34
VPS28-204ENST00000526054 HIST1H2BLQ99880 126 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 FAM30AQ9NZY2 134 aa6.65□□□□□ -1.34
VPS28-204ENST00000526054 SRRM2Q9UQ35 2752 aaKnown RBP6.65□□□□□ -1.35
VPS28-204ENST00000526054 J3QL48 77 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 LEPROTL1O95214 131 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 NPSP0C0P6 89 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 Q6ZN92 141 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 TMEM141Q96I45 108 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 HSPB8Q9UJY1 196 aa6.64□□□□□ -1.35
VPS28-204ENST00000526054 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.63□□□□□ -1.35
VPS28-204ENST00000526054 IGLV4-3A0A075B6K6 122 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 A0A096LNJ9 63 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 TRAV13-1A0A0B4J241 112 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 IFITM10A6NMD0 228 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 PLA2G1BP04054 148 aaKnown RBP6.63□□□□□ -1.35
VPS28-204ENST00000526054 XCL1P47992 114 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 PAPPA-AS1Q5QFB9 102 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 CFAP161Q6P656 301 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 C2orf88Q9BSF0 95 aa6.63□□□□□ -1.35
VPS28-204ENST00000526054 LOC105371267A0A1B0GV96 52 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 ATP5LO75964 103 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 FOXI1Q12951 378 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 CD164L2Q6UWJ8 174 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 TEX43Q6ZNM6 134 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 Q6ZSA8 131 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 LINC00528Q8N1L1 170 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 TOMM6Q96B49 74 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 TIMM17AQ99595 171 aa6.62□□□□□ -1.35
VPS28-204ENST00000526054 OPRPNQ99935 248 aaPredicted RBP6.62□□□□□ -1.35
VPS28-204ENST00000526054 IGIPA6NJ69 53 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 AKR1D1P51857 326 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 OR10D4PQ8NGN7 298 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 FAM104AQ969W3 186 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 SCGB3A1Q96QR1 104 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 VCX2Q9H322 139 aa6.61□□□□□ -1.35
VPS28-204ENST00000526054 IGHV1-58A0A0C4DH39 117 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 hDV102S1A0JD36 115 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 COX7A2LO14548 114 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 KRTDAPP60985 99 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 ERASQ7Z444 233 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 MAP1LC3CQ9BXW4 147 aa6.6□□□□□ -1.35
VPS28-204ENST00000526054 LRP1Q07954 4544 aaKnown RBP6.59□□□□□ -1.35
VPS28-204ENST00000526054 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.59□□□□□ -1.35
VPS28-204ENST00000526054 PRSS1P07477 247 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 MALP21145 153 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 LINC01620Q4KN68 170 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 C15orf56Q8N910 161 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 IFI27L1Q96BM0 104 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 AMELXQ99217 191 aa6.59□□□□□ -1.35
VPS28-204ENST00000526054 GVQW2A0A096LPI5 108 aaPredicted RBP6.58□□□□□ -1.36
VPS28-204ENST00000526054 APOMO95445 188 aa6.58□□□□□ -1.36
VPS28-204ENST00000526054 C3orf79P0CE67 100 aa6.58□□□□□ -1.36
VPS28-204ENST00000526054 LINC00173Q6ZV60 143 aa6.58□□□□□ -1.36
VPS28-204ENST00000526054 SCXQ7RTU7 201 aa6.58□□□□□ -1.36
VPS28-204ENST00000526054 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.57□□□□□ -1.36
VPS28-204ENST00000526054 C20orf202A1L168 122 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 KRTAP29-1A8MX34 341 aaPredicted RBP6.57□□□□□ -1.36
VPS28-204ENST00000526054 SYS1-DBNDD2H3BUS1 97 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 UBE2D1P51668 147 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 SEC11AP67812 179 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 HIGD2BQ4VC39 106 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 PET117Q6UWS5 81 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 C5orf38Q86SI9 138 aa6.57□□□□□ -1.36
VPS28-204ENST00000526054 FAT3Q8TDW7 4589 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 IGHV3OR16-9A0A0B4J2B5 98 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 H0Y8G0 127 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 ZNF561-AS1K7EIQ3 104 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 CNBPP62633 177 aaKnown RBP6.56□□□□□ -1.36
VPS28-204ENST00000526054 LINC00242Q5T6M2 205 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 ZC2HC1BQ5TFG8 222 aa6.56□□□□□ -1.36
VPS28-204ENST00000526054 PKHD1L1Q86WI1 4243 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 SCGB1D1O95968 90 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 HERVK_113P63121 156 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 JOSD1Q15040 202 aaPredicted RBP6.55□□□□□ -1.36
VPS28-204ENST00000526054 PMVKQ15126 192 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 FAM19A3Q7Z5A8 133 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 CHAC1Q9BUX1 264 aa6.55□□□□□ -1.36
VPS28-204ENST00000526054 GEMIN7Q9H840 131 aaKnown RBP6.55□□□□□ -1.36
VPS28-204ENST00000526054 A0A087WZ39 114 aa6.54□□□□□ -1.36
VPS28-204ENST00000526054 TRAV12-1A0A0B4J245 112 aa6.54□□□□□ -1.36
VPS28-204ENST00000526054 SMIM6P0DI80 62 aa6.54□□□□□ -1.36
VPS28-204ENST00000526054 SPAG11BQ08648 103 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms