RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 NAT8Q9UHE5 227 aa9.98□□□□□ -0.81
HIF3A-208ENST00000524533 TNFRSF6BO95407 300 aa9.97□□□□□ -0.81
HIF3A-208ENST00000524533 C1orf137Q5JT78 98 aa9.97□□□□□ -0.81
HIF3A-208ENST00000524533 SMIM2Q9BVW6 85 aa9.97□□□□□ -0.81
HIF3A-208ENST00000524533 SPANXA1Q9NS26 97 aa9.97□□□□□ -0.81
HIF3A-208ENST00000524533 MRPL35Q9NZE8 188 aaKnown RBP9.97□□□□□ -0.81
HIF3A-208ENST00000524533 NDUFA1O15239 70 aa9.96□□□□□ -0.82
HIF3A-208ENST00000524533 IFITM10A6NMD0 228 aa9.95□□□□□ -0.82
HIF3A-208ENST00000524533 D6R8Y8 96 aa9.95□□□□□ -0.82
HIF3A-208ENST00000524533 F8WDY8 70 aa9.95□□□□□ -0.82
HIF3A-208ENST00000524533 FAM104AQ969W3 186 aa9.95□□□□□ -0.82
HIF3A-208ENST00000524533 IMMP2LQ96T52 175 aa9.95□□□□□ -0.82
HIF3A-208ENST00000524533 IGHV3OR16-9A0A0B4J2B5 98 aa9.94□□□□□ -0.82
HIF3A-208ENST00000524533 S100A8P05109 93 aa9.94□□□□□ -0.82
HIF3A-208ENST00000524533 HBBP68871 147 aa9.94□□□□□ -0.82
HIF3A-208ENST00000524533 MRPS36P82909 103 aaKnown RBP9.94□□□□□ -0.82
HIF3A-208ENST00000524533 MRPL54Q6P161 138 aaKnown RBP9.94□□□□□ -0.82
HIF3A-208ENST00000524533 F8W036 122 aa9.93□□□□□ -0.82
HIF3A-208ENST00000524533 NPYP01303 97 aa9.93□□□□□ -0.82
HIF3A-208ENST00000524533 TGIF2-C20orf24A0A0A6YYL0 155 aa9.92□□□□□ -0.82
HIF3A-208ENST00000524533 C9JQL5 133 aa9.92□□□□□ -0.82
HIF3A-208ENST00000524533 IGLV7-43P04211 117 aa9.92□□□□□ -0.82
HIF3A-208ENST00000524533 C10orf25Q5T742 122 aa9.92□□□□□ -0.82
HIF3A-208ENST00000524533 DIRC1Q969H9 104 aa9.92□□□□□ -0.82
HIF3A-208ENST00000524533 A0A1B0GXF2 115 aa9.91□□□□□ -0.82
HIF3A-208ENST00000524533 FAM168BA1KXE4 195 aa9.91□□□□□ -0.82
HIF3A-208ENST00000524533 TLX1NBP0CAT3 122 aa9.91□□□□□ -0.82
HIF3A-208ENST00000524533 UNQ6190/PRO20217Q6UXQ8 127 aa9.91□□□□□ -0.82
HIF3A-208ENST00000524533 FAM19A5Q7Z5A7 132 aaPredicted RBP9.91□□□□□ -0.82
HIF3A-208ENST00000524533 C6orf48Q9UBA6 75 aa9.91□□□□□ -0.82
HIF3A-208ENST00000524533 A0A087WZ39 114 aa9.9□□□□□ -0.82
HIF3A-208ENST00000524533 PPBPP02775 128 aa9.9□□□□□ -0.82
HIF3A-208ENST00000524533 IFI27P40305 119 aaPredicted RBP9.9□□□□□ -0.82
HIF3A-208ENST00000524533 SRSF3P84103 164 aaKnown RBP9.9□□□□□ -0.82
HIF3A-208ENST00000524533 PEA15Q15121 130 aa9.9□□□□□ -0.82
HIF3A-208ENST00000524533 GAGE2EQ4V326 116 aa9.89□□□□□ -0.83
HIF3A-208ENST00000524533 SMDT1Q9H4I9 107 aa9.89□□□□□ -0.83
HIF3A-208ENST00000524533 GAGE2DQ9UEU5 116 aa9.89□□□□□ -0.83
HIF3A-208ENST00000524533 H0Y9J4 135 aa9.88□□□□□ -0.83
HIF3A-208ENST00000524533 RAB5AP20339 215 aa9.88□□□□□ -0.83
HIF3A-208ENST00000524533 KRTAP11-1Q8IUC1 163 aa9.88□□□□□ -0.83
HIF3A-208ENST00000524533 ORMDL3Q8N138 153 aa9.88□□□□□ -0.83
HIF3A-208ENST00000524533 PRR26Q8N8Z3 221 aa9.88□□□□□ -0.83
HIF3A-208ENST00000524533 IGLV4-3A0A075B6K6 122 aa9.86□□□□□ -0.83
HIF3A-208ENST00000524533 M0QXV9 152 aa9.86□□□□□ -0.83
HIF3A-208ENST00000524533 KIAA0087Q14695 138 aa9.86□□□□□ -0.83
HIF3A-208ENST00000524533 PRELID3AQ96N28 172 aa9.86□□□□□ -0.83
HIF3A-208ENST00000524533 PYGO1Q9Y3Y4 419 aa9.86□□□□□ -0.83
HIF3A-208ENST00000524533 UBE2BP63146 152 aa9.85□□□□□ -0.83
HIF3A-208ENST00000524533 LINC00242Q5T6M2 205 aa9.85□□□□□ -0.83
HIF3A-208ENST00000524533 TMEM136Q6ZRR5 245 aa9.85□□□□□ -0.83
HIF3A-208ENST00000524533 ATP5L2Q7Z4Y8 100 aa9.85□□□□□ -0.83
HIF3A-208ENST00000524533 TMEM141Q96I45 108 aa9.85□□□□□ -0.83
HIF3A-208ENST00000524533 TRBV30A0A0K0K1B3 111 aa9.84□□□□□ -0.83
HIF3A-208ENST00000524533 C2orf82Q6UX34 121 aa9.84□□□□□ -0.83
HIF3A-208ENST00000524533 TEX43Q6ZNM6 134 aa9.84□□□□□ -0.83
HIF3A-208ENST00000524533 KRTAP7-1Q8IUC3 87 aa9.84□□□□□ -0.83
HIF3A-208ENST00000524533 NDUFC2-KCTD14E9PQ53 114 aa9.83□□□□□ -0.84
HIF3A-208ENST00000524533 PACRGQ96M98 296 aaPredicted RBP9.83□□□□□ -0.84
HIF3A-208ENST00000524533 IGLV1-50A0A075B6I6 118 aa9.82□□□□□ -0.84
HIF3A-208ENST00000524533 C2orf88Q9BSF0 95 aa9.82□□□□□ -0.84
HIF3A-208ENST00000524533 LPAP08519 4548 aa9.81□□□□□ -0.84
HIF3A-208ENST00000524533 LOC389332A0A1B0GUA5 103 aa9.81□□□□□ -0.84
HIF3A-208ENST00000524533 UBE2D1P51668 147 aa9.81□□□□□ -0.84
HIF3A-208ENST00000524533 MAP1LC3AQ9H492 121 aa9.81□□□□□ -0.84
HIF3A-208ENST00000524533 LAMTOR2Q9Y2Q5 125 aa9.81□□□□□ -0.84
HIF3A-208ENST00000524533 PRSS47A8MTI9 375 aa9.8□□□□□ -0.84
HIF3A-208ENST00000524533 KRTAP1-4P0C5Y4 121 aa9.8□□□□□ -0.84
HIF3A-208ENST00000524533 C9orf129Q5T035 196 aaKnown RBP9.8□□□□□ -0.84
HIF3A-208ENST00000524533 Q6ZN92 141 aa9.8□□□□□ -0.84
HIF3A-208ENST00000524533 LINC01561Q8N1V8 128 aa9.8□□□□□ -0.84
HIF3A-208ENST00000524533 CYSLTR1Q9Y271 337 aa9.8□□□□□ -0.84
HIF3A-208ENST00000524533 A0A1B0GVG6 124 aa9.79□□□□□ -0.84
HIF3A-208ENST00000524533 PRSS2P07478 247 aa9.79□□□□□ -0.84
HIF3A-208ENST00000524533 C2orf66Q6UXQ4 117 aa9.79□□□□□ -0.84
HIF3A-208ENST00000524533 ZC2HC1BQ5TFG8 222 aa9.78□□□□□ -0.84
HIF3A-208ENST00000524533 LINC00173Q6ZV60 143 aa9.78□□□□□ -0.84
HIF3A-208ENST00000524533 Q8N8P6 123 aa9.78□□□□□ -0.84
HIF3A-208ENST00000524533 TOMM7Q9P0U1 55 aa9.78□□□□□ -0.84
HIF3A-208ENST00000524533 RPL13AP40429 203 aaKnown RBP9.77□□□□□ -0.85
HIF3A-208ENST00000524533 CKS1BP61024 79 aa9.77□□□□□ -0.85
HIF3A-208ENST00000524533 VCX2Q9H322 139 aa9.77□□□□□ -0.85
HIF3A-208ENST00000524533 ORMDL2Q53FV1 153 aa9.76□□□□□ -0.85
HIF3A-208ENST00000524533 AMELXQ99217 191 aa9.76□□□□□ -0.85
HIF3A-208ENST00000524533 Q8IZM0 81 aa9.75□□□□□ -0.85
HIF3A-208ENST00000524533 LINC00469Q8N7U9 141 aa9.75□□□□□ -0.85
HIF3A-208ENST00000524533 NPSP0C0P6 89 aa9.74□□□□□ -0.85
HIF3A-208ENST00000524533 PNRC1Q12796 327 aaPredicted RBP9.74□□□□□ -0.85
HIF3A-208ENST00000524533 C6orf226Q5I0X4 101 aa9.74□□□□□ -0.85
HIF3A-208ENST00000524533 K7EMI3 77 aa9.73□□□□□ -0.85
HIF3A-208ENST00000524533 NUPR1O60356 82 aa9.73□□□□□ -0.85
HIF3A-208ENST00000524533 MT-ND4LP03901 98 aa9.73□□□□□ -0.85
HIF3A-208ENST00000524533 FAM19A3Q7Z5A8 133 aa9.73□□□□□ -0.85
HIF3A-208ENST00000524533 ANAPC16Q96DE5 110 aa9.73□□□□□ -0.85
HIF3A-208ENST00000524533 ALKBH7Q9BT30 221 aaPredicted RBP9.73□□□□□ -0.85
HIF3A-208ENST00000524533 IGIPA6NJ69 53 aa9.72□□□□□ -0.85
HIF3A-208ENST00000524533 ZNF861PO60384 105 aa9.72□□□□□ -0.85
HIF3A-208ENST00000524533 PRR4Q16378 134 aa9.72□□□□□ -0.85
HIF3A-208ENST00000524533 XAGE1AQ9HD64 81 aa9.72□□□□□ -0.85
HIF3A-208ENST00000524533 CARHSP1Q9Y2V2 147 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms