RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 C5orf38Q86SI9 138 aa18.68■□□□□ 0.58
SYNPO-203ENST00000518872 IFI27P40305 119 aaPredicted RBP18.67■□□□□ 0.58
SYNPO-203ENST00000518872 IFITM2Q01629 132 aa18.67■□□□□ 0.58
SYNPO-203ENST00000518872 OPRPNQ99935 248 aaPredicted RBP18.67■□□□□ 0.58
SYNPO-203ENST00000518872 MAP1LC3AQ9H492 121 aa18.67■□□□□ 0.58
SYNPO-203ENST00000518872 Q6ZRU5 148 aa18.66■□□□□ 0.58
SYNPO-203ENST00000518872 OR10D4PQ8NGN7 298 aa18.66■□□□□ 0.58
SYNPO-203ENST00000518872 ADCYAP1P18509 176 aa18.65■□□□□ 0.58
SYNPO-203ENST00000518872 CAMK2N2Q96S95 79 aa18.65■□□□□ 0.58
SYNPO-203ENST00000518872 IFITM10A6NMD0 228 aa18.64■□□□□ 0.57
SYNPO-203ENST00000518872 Q8N8P6 123 aa18.64■□□□□ 0.57
SYNPO-203ENST00000518872 LOC107984640A0A0U1RRK4 108 aa18.63■□□□□ 0.57
SYNPO-203ENST00000518872 TMEM218A2RU14 115 aa18.63■□□□□ 0.57
SYNPO-203ENST00000518872 CTDSP1Q9GZU7 261 aa18.63■□□□□ 0.57
SYNPO-203ENST00000518872 F8WDY8 70 aa18.62■□□□□ 0.57
SYNPO-203ENST00000518872 K7EMI3 77 aa18.62■□□□□ 0.57
SYNPO-203ENST00000518872 PTTG1IPP53801 180 aa18.62■□□□□ 0.57
SYNPO-203ENST00000518872 SPAG11BQ08648 103 aa18.62■□□□□ 0.57
SYNPO-203ENST00000518872 IGLV4-3A0A075B6K6 122 aa18.61■□□□□ 0.57
SYNPO-203ENST00000518872 LOC389332A0A1B0GUA5 103 aa18.61■□□□□ 0.57
SYNPO-203ENST00000518872 RNF151Q2KHN1 245 aa18.61■□□□□ 0.57
SYNPO-203ENST00000518872 TRAV9-1A0A075B6T8 112 aa18.59■□□□□ 0.57
SYNPO-203ENST00000518872 TMEM141Q96I45 108 aa18.59■□□□□ 0.57
SYNPO-203ENST00000518872 ORMDL2Q53FV1 153 aa18.58■□□□□ 0.56
SYNPO-203ENST00000518872 CYSLTR1Q9Y271 337 aa18.58■□□□□ 0.56
SYNPO-203ENST00000518872 NPSP0C0P6 89 aa18.57■□□□□ 0.56
SYNPO-203ENST00000518872 ORAOV1Q8WV07 137 aa18.57■□□□□ 0.56
SYNPO-203ENST00000518872 SEC11CQ9BY50 192 aa18.57■□□□□ 0.56
SYNPO-203ENST00000518872 MRPL35Q9NZE8 188 aaKnown RBP18.57■□□□□ 0.56
SYNPO-203ENST00000518872 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP18.56■□□□□ 0.56
SYNPO-203ENST00000518872 PRR3P79522 188 aaKnown RBP18.56■□□□□ 0.56
SYNPO-203ENST00000518872 C2orf66Q6UXQ4 117 aa18.56■□□□□ 0.56
SYNPO-203ENST00000518872 NXT2Q9NPJ8 142 aaKnown RBP18.56■□□□□ 0.56
SYNPO-203ENST00000518872 A0A087WZ39 114 aa18.55■□□□□ 0.56
SYNPO-203ENST00000518872 TGIF2-C20orf24A0A0A6YYL0 155 aa18.55■□□□□ 0.56
SYNPO-203ENST00000518872 LINC00242Q5T6M2 205 aa18.55■□□□□ 0.56
SYNPO-203ENST00000518872 GAGE2BQ13066 116 aa18.54■□□□□ 0.56
SYNPO-203ENST00000518872 TEX43Q6ZNM6 134 aa18.54■□□□□ 0.56
SYNPO-203ENST00000518872 SERTAD4-AS1Q5TG53 156 aa18.52■□□□□ 0.56
SYNPO-203ENST00000518872 AMELXQ99217 191 aa18.52■□□□□ 0.56
SYNPO-203ENST00000518872 NDUFA1O15239 70 aa18.51■□□□□ 0.55
SYNPO-203ENST00000518872 UBE2D1P51668 147 aa18.51■□□□□ 0.55
SYNPO-203ENST00000518872 Q6ZN92 141 aa18.5■□□□□ 0.55
SYNPO-203ENST00000518872 LINC00173Q6ZV60 143 aa18.5■□□□□ 0.55
SYNPO-203ENST00000518872 LINC01561Q8N1V8 128 aa18.5■□□□□ 0.55
SYNPO-203ENST00000518872 C2orf88Q9BSF0 95 aa18.5■□□□□ 0.55
SYNPO-203ENST00000518872 IGIPA6NJ69 53 aa18.49■□□□□ 0.55
SYNPO-203ENST00000518872 G0S2P27469 103 aa18.49■□□□□ 0.55
SYNPO-203ENST00000518872 KIAA0087Q14695 138 aa18.48■□□□□ 0.55
SYNPO-203ENST00000518872 TLX1NBP0CAT3 122 aa18.47■□□□□ 0.55
SYNPO-203ENST00000518872 MT1HL1P0DM35 61 aa18.47■□□□□ 0.55
SYNPO-203ENST00000518872 RPL18AQ02543 176 aaKnown RBP18.47■□□□□ 0.55
SYNPO-203ENST00000518872 FAM19A3Q7Z5A8 133 aa18.47■□□□□ 0.55
SYNPO-203ENST00000518872 A0A1W2PNN7 141 aa18.46■□□□□ 0.55
SYNPO-203ENST00000518872 C10orf91Q5T1B1 145 aa18.46■□□□□ 0.55
SYNPO-203ENST00000518872 COMMD7Q86VX2 200 aa18.46■□□□□ 0.55
SYNPO-203ENST00000518872 GNB1LQ9BYB4 327 aa18.46■□□□□ 0.55
SYNPO-203ENST00000518872 VCX2Q9H322 139 aa18.46■□□□□ 0.55
SYNPO-203ENST00000518872 A0A0J9YXV3 536 aa18.45■□□□□ 0.54
SYNPO-203ENST00000518872 S100PP25815 95 aa18.45■□□□□ 0.54
SYNPO-203ENST00000518872 Q6ZRP5 223 aa18.45■□□□□ 0.54
SYNPO-203ENST00000518872 KIAA1644Q3SXP7 199 aa18.44■□□□□ 0.54
SYNPO-203ENST00000518872 C9orf116Q5BN46 136 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-203ENST00000518872 C10orf25Q5T742 122 aa18.44■□□□□ 0.54
SYNPO-203ENST00000518872 TIMM17AQ99595 171 aa18.44■□□□□ 0.54
SYNPO-203ENST00000518872 COX19Q49B96 90 aa18.43■□□□□ 0.54
SYNPO-203ENST00000518872 PAPPA-AS1Q5QFB9 102 aa18.43■□□□□ 0.54
SYNPO-203ENST00000518872 UNQ6190/PRO20217Q6UXQ8 127 aa18.43■□□□□ 0.54
SYNPO-203ENST00000518872 C6orf48Q9UBA6 75 aa18.43■□□□□ 0.54
SYNPO-203ENST00000518872 ZC2HC1BQ5TFG8 222 aa18.41■□□□□ 0.54
SYNPO-203ENST00000518872 TOMM6Q96B49 74 aa18.41■□□□□ 0.54
SYNPO-203ENST00000518872 CARHSP1Q9Y2V2 147 aaKnown RBP18.41■□□□□ 0.54
SYNPO-203ENST00000518872 TRBV30A0A0K0K1B3 111 aa18.39■□□□□ 0.53
SYNPO-203ENST00000518872 LINC01546A6NGU7 62 aa18.39■□□□□ 0.53
SYNPO-203ENST00000518872 SPINK6Q6UWN8 80 aa18.39■□□□□ 0.53
SYNPO-203ENST00000518872 SEC11AP67812 179 aa18.38■□□□□ 0.53
SYNPO-203ENST00000518872 RHEBQ15382 184 aa18.38■□□□□ 0.53
SYNPO-203ENST00000518872 LINC01549A6NIU2 74 aa18.37■□□□□ 0.53
SYNPO-203ENST00000518872 MT-ND6P03923 174 aa18.37■□□□□ 0.53
SYNPO-203ENST00000518872 SRSF9Q13242 221 aaKnown RBP eCLIP18.37■□□□□ 0.53
SYNPO-203ENST00000518872 ALKBH7Q9BT30 221 aaPredicted RBP18.37■□□□□ 0.53
SYNPO-203ENST00000518872 ERASQ7Z444 233 aa18.36■□□□□ 0.53
SYNPO-203ENST00000518872 HERVK_113P63121 156 aa18.35■□□□□ 0.53
SYNPO-203ENST00000518872 HMCN2Q8NDA2 5059 aa18.34■□□□□ 0.53
SYNPO-203ENST00000518872 LINC01600Q96MT4 127 aa18.34■□□□□ 0.53
SYNPO-203ENST00000518872 C2orf82Q6UX34 121 aa18.32■□□□□ 0.52
SYNPO-203ENST00000518872 Q8IZM0 81 aa18.31■□□□□ 0.52
SYNPO-203ENST00000518872 PACRGQ96M98 296 aaPredicted RBP18.31■□□□□ 0.52
SYNPO-203ENST00000518872 RPS10P5Q9NQ39 176 aa18.31■□□□□ 0.52
SYNPO-203ENST00000518872 NDUFC2-KCTD14E9PQ53 114 aa18.3■□□□□ 0.52
SYNPO-203ENST00000518872 PHF5AQ7RTV0 110 aaKnown RBP18.3■□□□□ 0.52
SYNPO-203ENST00000518872 SCGB3A1Q96QR1 104 aa18.3■□□□□ 0.52
SYNPO-203ENST00000518872 PSORS1C2Q9UIG4 136 aa18.3■□□□□ 0.52
SYNPO-203ENST00000518872 MRPL18Q9H0U6 180 aaKnown RBP18.29■□□□□ 0.52
SYNPO-203ENST00000518872 CDKN2A-AS1Q9UH64 79 aa18.29■□□□□ 0.52
SYNPO-203ENST00000518872 TNXBP22105 4242 aa18.29■□□□□ 0.52
SYNPO-203ENST00000518872 PRSS2P07478 247 aa18.28■□□□□ 0.52
SYNPO-203ENST00000518872 REG3GQ6UW15 175 aa18.28■□□□□ 0.52
SYNPO-203ENST00000518872 GEMIN7Q9H840 131 aaKnown RBP18.28■□□□□ 0.52
SYNPO-203ENST00000518872 GAGE2EQ4V326 116 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms