RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 IGHV4-59P01825 116 aa12.15□□□□□ -0.47
SQSTM1-211ENST00000506690 MSMBP08118 114 aa12.14□□□□□ -0.47
SQSTM1-211ENST00000506690 CREBBPQ92793 2442 aa12.14□□□□□ -0.47
SQSTM1-211ENST00000506690 A0A087WVE0 104 aa12.13□□□□□ -0.47
SQSTM1-211ENST00000506690 KIR2DL5BQ8NHK3 375 aa12.13□□□□□ -0.47
SQSTM1-211ENST00000506690 EPG5Q9HCE0 2579 aa12.13□□□□□ -0.47
SQSTM1-211ENST00000506690 BBC3Q96PG8 261 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-211ENST00000506690 USP17L23D6RBM5 183 aa12.12□□□□□ -0.47
SQSTM1-211ENST00000506690 UBE2E2Q96LR5 201 aa12.12□□□□□ -0.47
SQSTM1-211ENST00000506690 INSP01308 110 aa12.11□□□□□ -0.47
SQSTM1-211ENST00000506690 RPL36AP83881 106 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-211ENST00000506690 RPL36ALQ969Q0 106 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-211ENST00000506690 TRBV10-1A0A0K0K1A3 114 aa12.11□□□□□ -0.47
SQSTM1-211ENST00000506690 COX7B2Q8TF08 81 aa12.11□□□□□ -0.47
SQSTM1-211ENST00000506690 IGHV4-30-2A0A087WSY4 118 aa12.1□□□□□ -0.47
SQSTM1-211ENST00000506690 MAP6D1Q9H9H5 199 aa12.1□□□□□ -0.47
SQSTM1-211ENST00000506690 K7EQD1 137 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 LECT2O14960 151 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 CCL18P55774 89 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 DEFB112Q30KQ8 113 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 IL17DQ8TAD2 202 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 NCR3O14931 201 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 OXTP01178 125 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 CSPG4Q6UVK1 2322 aa12.09□□□□□ -0.47
SQSTM1-211ENST00000506690 WIPF1O43516 503 aa12.08□□□□□ -0.48
SQSTM1-211ENST00000506690 SLURP1P55000 103 aa12.08□□□□□ -0.48
SQSTM1-211ENST00000506690 ZNF843Q8N446 348 aa12.08□□□□□ -0.48
SQSTM1-211ENST00000506690 TRGV1A0A0A0MS02 117 aa12.07□□□□□ -0.48
SQSTM1-211ENST00000506690 LINC00158P58513 81 aa12.07□□□□□ -0.48
SQSTM1-211ENST00000506690 SS18Q15532 418 aa12.07□□□□□ -0.48
SQSTM1-211ENST00000506690 DOPEY1Q5JWR5 2465 aa12.06□□□□□ -0.48
SQSTM1-211ENST00000506690 DSCR8Q96T75 97 aa12.06□□□□□ -0.48
SQSTM1-211ENST00000506690 MAP1AP78559 2803 aaPredicted RBP12.06□□□□□ -0.48
SQSTM1-211ENST00000506690 FLNCQ14315 2725 aa12.06□□□□□ -0.48
SQSTM1-211ENST00000506690 USP9XQ93008 2570 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-211ENST00000506690 CCKP06307 115 aa12.05□□□□□ -0.48
SQSTM1-211ENST00000506690 DEFB136Q30KP8 78 aa12.05□□□□□ -0.48
SQSTM1-211ENST00000506690 TMEM243Q9BU79 118 aa12.05□□□□□ -0.48
SQSTM1-211ENST00000506690 TOMM7Q9P0U1 55 aa12.05□□□□□ -0.48
SQSTM1-211ENST00000506690 ZNF462Q96JM2 2506 aa12.04□□□□□ -0.48
SQSTM1-211ENST00000506690 IBA57-AS1B1ANH7 110 aa12.04□□□□□ -0.48
SQSTM1-211ENST00000506690 B4DSR2 109 aa12.04□□□□□ -0.48
SQSTM1-211ENST00000506690 UBE2L6O14933 153 aa12.04□□□□□ -0.48
SQSTM1-211ENST00000506690 SPG11Q96JI7 2443 aa12.04□□□□□ -0.48
SQSTM1-211ENST00000506690 SLPIP03973 132 aa12.03□□□□□ -0.48
SQSTM1-211ENST00000506690 C18orf65Q6ZTR6 163 aa12.03□□□□□ -0.48
SQSTM1-211ENST00000506690 XCL2Q9UBD3 114 aa12.03□□□□□ -0.48
SQSTM1-211ENST00000506690 CELSR2Q9HCU4 2923 aa12.03□□□□□ -0.48
SQSTM1-211ENST00000506690 ORMDL1Q9P0S3 153 aa12.03□□□□□ -0.48
SQSTM1-211ENST00000506690 C1orf158Q8N1D5 194 aa12.02□□□□□ -0.48
SQSTM1-211ENST00000506690 LY6G6DO95868 133 aa12.02□□□□□ -0.49
SQSTM1-211ENST00000506690 Q6ZTI0 123 aa12.02□□□□□ -0.49
SQSTM1-211ENST00000506690 ZNF702PQ9H963 129 aa12.02□□□□□ -0.49
SQSTM1-211ENST00000506690 MYO18BQ8IUG5 2567 aa12.02□□□□□ -0.49
SQSTM1-211ENST00000506690 FHL2Q14192 279 aa12.01□□□□□ -0.49
SQSTM1-211ENST00000506690 IGHV3OR16-9A0A0B4J2B5 98 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 TRBV6-4A0A1B0GX49 114 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 LINC00167Q96N53 147 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 S100A7L2Q5SY68 101 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 ATP5EP2Q5VTU8 51 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 Q5XG85 94 aa12□□□□□ -0.49
SQSTM1-211ENST00000506690 PAX4O43316 350 aa11.99□□□□□ -0.49
SQSTM1-211ENST00000506690 HILS1P60008 231 aa11.99□□□□□ -0.49
SQSTM1-211ENST00000506690 UTP20O75691 2785 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-211ENST00000506690 PFN2P35080 140 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 LYPD5Q6UWN5 251 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 CSMD2Q7Z408 3487 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 NDUFC2-KCTD14E9PQ53 114 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 C4orf26Q17RF5 130 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 DEFB114Q30KQ6 69 aa11.98□□□□□ -0.49
SQSTM1-211ENST00000506690 TRAV25A0A0B4J276 109 aa11.97□□□□□ -0.49
SQSTM1-211ENST00000506690 GHRHP01286 108 aa11.97□□□□□ -0.49
SQSTM1-211ENST00000506690 DYNLRB2Q8TF09 96 aa11.97□□□□□ -0.49
SQSTM1-211ENST00000506690 A0A087WZ39 114 aa11.97□□□□□ -0.49
SQSTM1-211ENST00000506690 JMJD7-PLA2G4BH0Y9G9 81 aa11.97□□□□□ -0.49
SQSTM1-211ENST00000506690 NDUFC2O95298 119 aa11.96□□□□□ -0.49
SQSTM1-211ENST00000506690 IGKV3OR2-268A0A0C4DH90 116 aa11.95□□□□□ -0.5
SQSTM1-211ENST00000506690 ODF3L2Q3SX64 289 aa11.95□□□□□ -0.5
SQSTM1-211ENST00000506690 IGLV4-60A0A075B6I1 120 aa11.95□□□□□ -0.5
SQSTM1-211ENST00000506690 DSCR9P59020 149 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 WFDC9Q8NEX5 89 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 FAM208BQ5VWN6 2430 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 C2CD3Q4AC94 2353 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 TRAV23DV6A0A075B6W5 121 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 STHQ8IWL8 128 aa11.94□□□□□ -0.5
SQSTM1-211ENST00000506690 TRBV10-3A0A0K0K1G6 114 aa11.93□□□□□ -0.5
SQSTM1-211ENST00000506690 LOC100131303A0A0U1RQF7 123 aa11.93□□□□□ -0.5
SQSTM1-211ENST00000506690 FAM19A1Q7Z5A9 133 aa11.93□□□□□ -0.5
SQSTM1-211ENST00000506690 Q8N814 137 aa11.92□□□□□ -0.5
SQSTM1-211ENST00000506690 ENHOQ6UWT2 76 aa11.92□□□□□ -0.5
SQSTM1-211ENST00000506690 NOP10Q9NPE3 64 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-211ENST00000506690 TMEM256-PLSCR3K7ERE1 68 aa11.91□□□□□ -0.5
SQSTM1-211ENST00000506690 NANOS2P60321 138 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-211ENST00000506690 HRCT1Q6UXD1 115 aa11.91□□□□□ -0.5
SQSTM1-211ENST00000506690 C4orf3Q8WVX3 66 aa11.91□□□□□ -0.5
SQSTM1-211ENST00000506690 Q6YL49 198 aa11.91□□□□□ -0.5
SQSTM1-211ENST00000506690 A0A096LNT2 108 aa11.9□□□□□ -0.5
SQSTM1-211ENST00000506690 LINC01356Q8N9X3 169 aa11.9□□□□□ -0.5
SQSTM1-211ENST00000506690 MAPK1IP1LQ8NDC0 245 aa11.9□□□□□ -0.5
SQSTM1-211ENST00000506690 LRRK2Q5S007 2527 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms