RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 SMIM27A0A1W2PRY6 76 aa13.5□□□□□ -0.25
HDDC3-203ENST00000494993 ORAOV1Q8WV07 137 aa13.5□□□□□ -0.25
HDDC3-203ENST00000494993 A0A1B0GW15 77 aa13.49□□□□□ -0.25
HDDC3-203ENST00000494993 F8WDY8 70 aa13.49□□□□□ -0.25
HDDC3-203ENST00000494993 TNFRSF6BO95407 300 aa13.49□□□□□ -0.25
HDDC3-203ENST00000494993 SMIM2Q9BVW6 85 aa13.49□□□□□ -0.25
HDDC3-203ENST00000494993 SPANXA1Q9NS26 97 aa13.49□□□□□ -0.25
HDDC3-203ENST00000494993 IGHV3OR16-9A0A0B4J2B5 98 aa13.48□□□□□ -0.25
HDDC3-203ENST00000494993 NAT8Q9UHE5 227 aa13.48□□□□□ -0.25
HDDC3-203ENST00000494993 NDUFA1O15239 70 aa13.47□□□□□ -0.25
HDDC3-203ENST00000494993 IMMP2LQ96T52 175 aa13.47□□□□□ -0.25
HDDC3-203ENST00000494993 MRPS36P82909 103 aaKnown RBP13.46□□□□□ -0.25
HDDC3-203ENST00000494993 C9JQL5 133 aa13.45□□□□□ -0.26
HDDC3-203ENST00000494993 D6R8Y8 96 aa13.45□□□□□ -0.26
HDDC3-203ENST00000494993 HBBP68871 147 aa13.45□□□□□ -0.26
HDDC3-203ENST00000494993 C10orf25Q5T742 122 aa13.45□□□□□ -0.26
HDDC3-203ENST00000494993 IFITM10A6NMD0 228 aa13.44□□□□□ -0.26
HDDC3-203ENST00000494993 IGLV7-43P04211 117 aa13.44□□□□□ -0.26
HDDC3-203ENST00000494993 TLX1NBP0CAT3 122 aa13.44□□□□□ -0.26
HDDC3-203ENST00000494993 FAM168BA1KXE4 195 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 NPYP01303 97 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 S100A8P05109 93 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 MRPL54Q6P161 138 aaKnown RBP13.43□□□□□ -0.26
HDDC3-203ENST00000494993 UNQ6190/PRO20217Q6UXQ8 127 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 DIRC1Q969H9 104 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 LPAP08519 4548 aa13.43□□□□□ -0.26
HDDC3-203ENST00000494993 F8W036 122 aa13.42□□□□□ -0.26
HDDC3-203ENST00000494993 KRTAP11-1Q8IUC1 163 aa13.42□□□□□ -0.26
HDDC3-203ENST00000494993 C6orf48Q9UBA6 75 aa13.42□□□□□ -0.26
HDDC3-203ENST00000494993 A0A087WZ39 114 aa13.41□□□□□ -0.26
HDDC3-203ENST00000494993 A0A1B0GXF2 115 aa13.41□□□□□ -0.26
HDDC3-203ENST00000494993 TGIF2-C20orf24A0A0A6YYL0 155 aa13.4□□□□□ -0.26
HDDC3-203ENST00000494993 SRSF3P84103 164 aaKnown RBP13.4□□□□□ -0.26
HDDC3-203ENST00000494993 FAM19A5Q7Z5A7 132 aaPredicted RBP13.4□□□□□ -0.26
HDDC3-203ENST00000494993 PRR26Q8N8Z3 221 aa13.4□□□□□ -0.26
HDDC3-203ENST00000494993 PPBPP02775 128 aa13.39□□□□□ -0.27
HDDC3-203ENST00000494993 GAGE2EQ4V326 116 aa13.39□□□□□ -0.27
HDDC3-203ENST00000494993 SMDT1Q9H4I9 107 aa13.39□□□□□ -0.27
HDDC3-203ENST00000494993 GAGE2DQ9UEU5 116 aa13.39□□□□□ -0.27
HDDC3-203ENST00000494993 H0Y9J4 135 aa13.38□□□□□ -0.27
HDDC3-203ENST00000494993 KIAA0087Q14695 138 aa13.38□□□□□ -0.27
HDDC3-203ENST00000494993 PEA15Q15121 130 aa13.38□□□□□ -0.27
HDDC3-203ENST00000494993 IFI27P40305 119 aaPredicted RBP13.37□□□□□ -0.27
HDDC3-203ENST00000494993 RAB5AP20339 215 aa13.36□□□□□ -0.27
HDDC3-203ENST00000494993 KRTAP7-1Q8IUC3 87 aa13.36□□□□□ -0.27
HDDC3-203ENST00000494993 ORMDL3Q8N138 153 aa13.36□□□□□ -0.27
HDDC3-203ENST00000494993 PYGO1Q9Y3Y4 419 aa13.36□□□□□ -0.27
HDDC3-203ENST00000494993 IGLV4-3A0A075B6K6 122 aa13.35□□□□□ -0.27
HDDC3-203ENST00000494993 LINC00242Q5T6M2 205 aa13.35□□□□□ -0.27
HDDC3-203ENST00000494993 TRBV30A0A0K0K1B3 111 aa13.34□□□□□ -0.27
HDDC3-203ENST00000494993 M0QXV9 152 aa13.34□□□□□ -0.27
HDDC3-203ENST00000494993 TMEM136Q6ZRR5 245 aa13.34□□□□□ -0.27
HDDC3-203ENST00000494993 PRELID3AQ96N28 172 aa13.34□□□□□ -0.27
HDDC3-203ENST00000494993 UBE2BP63146 152 aa13.33□□□□□ -0.28
HDDC3-203ENST00000494993 TMEM141Q96I45 108 aa13.33□□□□□ -0.28
HDDC3-203ENST00000494993 ATP5L2Q7Z4Y8 100 aa13.32□□□□□ -0.28
HDDC3-203ENST00000494993 IGLV1-50A0A075B6I6 118 aa13.31□□□□□ -0.28
HDDC3-203ENST00000494993 NDUFC2-KCTD14E9PQ53 114 aa13.31□□□□□ -0.28
HDDC3-203ENST00000494993 KRTAP1-4P0C5Y4 121 aa13.31□□□□□ -0.28
HDDC3-203ENST00000494993 C2orf82Q6UX34 121 aa13.31□□□□□ -0.28
HDDC3-203ENST00000494993 TEX43Q6ZNM6 134 aa13.3□□□□□ -0.28
HDDC3-203ENST00000494993 PACRGQ96M98 296 aaPredicted RBP13.3□□□□□ -0.28
HDDC3-203ENST00000494993 PRSS47A8MTI9 375 aa13.29□□□□□ -0.28
HDDC3-203ENST00000494993 UBE2D1P51668 147 aa13.29□□□□□ -0.28
HDDC3-203ENST00000494993 C9orf129Q5T035 196 aaKnown RBP13.29□□□□□ -0.28
HDDC3-203ENST00000494993 LINC01561Q8N1V8 128 aa13.29□□□□□ -0.28
HDDC3-203ENST00000494993 C2orf88Q9BSF0 95 aa13.27□□□□□ -0.29
HDDC3-203ENST00000494993 LAMTOR2Q9Y2Q5 125 aa13.27□□□□□ -0.29
HDDC3-203ENST00000494993 LOC389332A0A1B0GUA5 103 aa13.26□□□□□ -0.29
HDDC3-203ENST00000494993 MAP1LC3AQ9H492 121 aa13.26□□□□□ -0.29
HDDC3-203ENST00000494993 ZC2HC1BQ5TFG8 222 aa13.25□□□□□ -0.29
HDDC3-203ENST00000494993 C2orf66Q6UXQ4 117 aa13.25□□□□□ -0.29
HDDC3-203ENST00000494993 LINC00173Q6ZV60 143 aa13.25□□□□□ -0.29
HDDC3-203ENST00000494993 CYSLTR1Q9Y271 337 aa13.25□□□□□ -0.29
HDDC3-203ENST00000494993 A0A1B0GVG6 124 aa13.24□□□□□ -0.29
HDDC3-203ENST00000494993 Q6ZN92 141 aa13.24□□□□□ -0.29
HDDC3-203ENST00000494993 AMELXQ99217 191 aa13.24□□□□□ -0.29
HDDC3-203ENST00000494993 PRSS2P07478 247 aa13.23□□□□□ -0.29
HDDC3-203ENST00000494993 Q8N8P6 123 aa13.23□□□□□ -0.29
HDDC3-203ENST00000494993 RPL13AP40429 203 aaKnown RBP13.22□□□□□ -0.29
HDDC3-203ENST00000494993 VCX2Q9H322 139 aa13.22□□□□□ -0.29
HDDC3-203ENST00000494993 TOMM7Q9P0U1 55 aa13.22□□□□□ -0.29
HDDC3-203ENST00000494993 NPSP0C0P6 89 aa13.2□□□□□ -0.3
HDDC3-203ENST00000494993 CKS1BP61024 79 aa13.2□□□□□ -0.3
HDDC3-203ENST00000494993 ORMDL2Q53FV1 153 aa13.2□□□□□ -0.3
HDDC3-203ENST00000494993 FAM19A3Q7Z5A8 133 aa13.2□□□□□ -0.3
HDDC3-203ENST00000494993 Q8IZM0 81 aa13.2□□□□□ -0.3
HDDC3-203ENST00000494993 C6orf226Q5I0X4 101 aa13.19□□□□□ -0.3
HDDC3-203ENST00000494993 LINC00469Q8N7U9 141 aa13.19□□□□□ -0.3
HDDC3-203ENST00000494993 CARHSP1Q9Y2V2 147 aaKnown RBP13.19□□□□□ -0.3
HDDC3-203ENST00000494993 IGIPA6NJ69 53 aa13.18□□□□□ -0.3
HDDC3-203ENST00000494993 ZNF861PO60384 105 aa13.18□□□□□ -0.3
HDDC3-203ENST00000494993 C22orf24Q9Y442 160 aa13.18□□□□□ -0.3
HDDC3-203ENST00000494993 K7EMI3 77 aa13.17□□□□□ -0.3
HDDC3-203ENST00000494993 NUPR1O60356 82 aa13.17□□□□□ -0.3
HDDC3-203ENST00000494993 ALKBH7Q9BT30 221 aaPredicted RBP13.17□□□□□ -0.3
HDDC3-203ENST00000494993 PRR4Q16378 134 aa13.16□□□□□ -0.3
HDDC3-203ENST00000494993 ANAPC16Q96DE5 110 aa13.16□□□□□ -0.3
HDDC3-203ENST00000494993 XAGE1AQ9HD64 81 aa13.16□□□□□ -0.3
HDDC3-203ENST00000494993 PNRC1Q12796 327 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms