RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 G3V4G9 280 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 P0C879 139 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 PRR9Q5T870 116 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 MBD6Q96DN6 1003 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 RNASE3P12724 160 aaKnown RBP9.55□□□□□ -0.88
COL6A3-212ENST00000491769 PYGO1Q9Y3Y4 419 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 POM121L12Q8N7R1 296 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 NDUFC2-KCTD14E9PQ53 114 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 UNQ6190/PRO20217Q6UXQ8 127 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 FAM240AA0A1B0GVK7 77 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 RNF185Q96GF1 192 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 PRO3102Q9H379 93 aa9.55□□□□□ -0.88
COL6A3-212ENST00000491769 EDN2P20800 178 aa9.54□□□□□ -0.88
COL6A3-212ENST00000491769 TRBV27A0A0K0K1C4 114 aa9.54□□□□□ -0.88
COL6A3-212ENST00000491769 A0A0U1RQV1 116 aa9.54□□□□□ -0.88
COL6A3-212ENST00000491769 CSPG4Q6UVK1 2322 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 C9orf116Q5BN46 136 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-212ENST00000491769 Q6Q795 121 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 Q8IZM0 81 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 Q8N6K4 173 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 ARHGAP21Q5T5U3 1957 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 MAPKAPK5-AS1Q8N8E1 139 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 V9GYY9 64 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 CUL9Q8IWT3 2517 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 MED12LQ86YW9 2145 aa9.53□□□□□ -0.88
COL6A3-212ENST00000491769 TRBV30A0A0K0K1B3 111 aa9.52□□□□□ -0.89
COL6A3-212ENST00000491769 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-212ENST00000491769 PRR14LQ5THK1 2151 aa9.52□□□□□ -0.89
COL6A3-212ENST00000491769 CELA1Q9UNI1 258 aa9.52□□□□□ -0.89
COL6A3-212ENST00000491769 COX6A2Q02221 97 aa9.51□□□□□ -0.89
COL6A3-212ENST00000491769 NHLRC4P0CG21 123 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-212ENST00000491769 ODF3L2Q3SX64 289 aa9.51□□□□□ -0.89
COL6A3-212ENST00000491769 C2orf48Q96LS8 159 aa9.51□□□□□ -0.89
COL6A3-212ENST00000491769 KLLNB2CW77 178 aa9.51□□□□□ -0.89
COL6A3-212ENST00000491769 MRPS36P82909 103 aaKnown RBP9.5□□□□□ -0.89
COL6A3-212ENST00000491769 EGFEM1PQ0D2K5 195 aa9.5□□□□□ -0.89
COL6A3-212ENST00000491769 CDC42SE2Q9NRR3 84 aa9.5□□□□□ -0.89
COL6A3-212ENST00000491769 Q9BRP9 147 aa9.5□□□□□ -0.89
COL6A3-212ENST00000491769 C11orf1Q9H5F2 150 aa9.5□□□□□ -0.89
COL6A3-212ENST00000491769 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 HIVEP3Q5T1R4 2406 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 ACACBO00763 2458 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 COL4A4P53420 1690 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-212ENST00000491769 XGP55808 180 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 SPG11Q96JI7 2443 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 UQCRQO14949 82 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 TIMM17BO60830 172 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 MT-ATP8P03928 68 aa9.49□□□□□ -0.89
COL6A3-212ENST00000491769 TRBV10-3A0A0K0K1G6 114 aa9.48□□□□□ -0.89
COL6A3-212ENST00000491769 Q6ZPA2 131 aa9.47□□□□□ -0.89
COL6A3-212ENST00000491769 C11orf21Q9P2W6 132 aa9.47□□□□□ -0.89
COL6A3-212ENST00000491769 FREM1Q5H8C1 2179 aa9.47□□□□□ -0.89
COL6A3-212ENST00000491769 TANC2Q9HCD6 1990 aa9.47□□□□□ -0.89
COL6A3-212ENST00000491769 EIF4EBP1Q13541 118 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-212ENST00000491769 MRPS12O15235 138 aaKnown RBP9.47□□□□□ -0.89
COL6A3-212ENST00000491769 PRRC2AP48634 2157 aaKnown RBP9.47□□□□□ -0.89
COL6A3-212ENST00000491769 TRBV7-6A0A0J9YX20 115 aa9.47□□□□□ -0.89
COL6A3-212ENST00000491769 LIMD2Q9BT23 127 aa9.46□□□□□ -0.89
COL6A3-212ENST00000491769 C16orf95Q9H693 158 aa9.46□□□□□ -0.89
COL6A3-212ENST00000491769 CHCHD7Q9BUK0 85 aa9.46□□□□□ -0.89
COL6A3-212ENST00000491769 NRACQ8N912 160 aa9.46□□□□□ -0.9
COL6A3-212ENST00000491769 RNASE8Q8TDE3 154 aaKnown RBP9.46□□□□□ -0.9
COL6A3-212ENST00000491769 TP73-AS1Q9UF72 201 aa9.46□□□□□ -0.9
COL6A3-212ENST00000491769 KIAA1549Q9HCM3 1950 aa9.46□□□□□ -0.9
COL6A3-212ENST00000491769 LINC00208Q96KT6 92 aa9.45□□□□□ -0.9
COL6A3-212ENST00000491769 PCOTHQ58A44 107 aa9.45□□□□□ -0.9
COL6A3-212ENST00000491769 ALPK3Q96L96 1907 aa9.44□□□□□ -0.9
COL6A3-212ENST00000491769 PRR3P79522 188 aaKnown RBP9.44□□□□□ -0.9
COL6A3-212ENST00000491769 MUC7Q8TAX7 377 aa9.44□□□□□ -0.9
COL6A3-212ENST00000491769 CRIP2P52943 208 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-212ENST00000491769 MDFIQ99750 246 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 IGLV4-60A0A075B6I1 120 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 NDUFC1O43677 76 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 FHL2Q14192 279 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 DEFB116Q30KQ4 102 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 SBSPONQ8IVN8 264 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 FAM229AH3BQW9 127 aa9.43□□□□□ -0.9
COL6A3-212ENST00000491769 ATP5EP56381 51 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-212ENST00000491769 Q6JHZ5 121 aa9.42□□□□□ -0.9
COL6A3-212ENST00000491769 LINC01547P58512 204 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-212ENST00000491769 LYPD5Q6UWN5 251 aa9.41□□□□□ -0.9
COL6A3-212ENST00000491769 ZNF295-AS1Q8N0V1 137 aa9.41□□□□□ -0.9
COL6A3-212ENST00000491769 POLR2KP53803 58 aaKnown RBP9.41□□□□□ -0.9
COL6A3-212ENST00000491769 NTM-AS1Q6ZSK4 140 aa9.41□□□□□ -0.9
COL6A3-212ENST00000491769 FHL3Q13643 280 aa9.4□□□□□ -0.9
COL6A3-212ENST00000491769 PRLHP81277 87 aa9.4□□□□□ -0.9
COL6A3-212ENST00000491769 LINC00242Q5T6M2 205 aa9.4□□□□□ -0.91
COL6A3-212ENST00000491769 SPACA4Q8TDM5 124 aa9.4□□□□□ -0.91
COL6A3-212ENST00000491769 A0A087WSZ3 146 aa9.39□□□□□ -0.91
COL6A3-212ENST00000491769 J3QL48 77 aa9.39□□□□□ -0.91
COL6A3-212ENST00000491769 LTBP2Q14767 1821 aa9.39□□□□□ -0.91
COL6A3-212ENST00000491769 GAS8-AS1O95177 125 aa9.39□□□□□ -0.91
COL6A3-212ENST00000491769 IGKV2D-30A0A075B6S6 120 aa9.38□□□□□ -0.91
COL6A3-212ENST00000491769 IGKV2-30P06310 120 aa9.38□□□□□ -0.91
COL6A3-212ENST00000491769 ANKHD1Q8IWZ3 2542 aaKnown RBP9.38□□□□□ -0.91
COL6A3-212ENST00000491769 NUP210LQ5VU65 1888 aa9.38□□□□□ -0.91
COL6A3-212ENST00000491769 LINC00694P0DN24 101 aa9.37□□□□□ -0.91
COL6A3-212ENST00000491769 Q8N814 137 aa9.37□□□□□ -0.91
COL6A3-212ENST00000491769 KIAA1549LQ6ZVL6 1849 aa9.37□□□□□ -0.91
COL6A3-212ENST00000491769 PLA2G1BP04054 148 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms