RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 NDUFA4O00483 81 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 RHOHQ15669 191 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 CTSGP08311 255 aa5.55□□□□□ -1.52
USP4-211ENST00000485450 DAND5Q8N907 189 aa5.55□□□□□ -1.52
USP4-211ENST00000485450 FBN3Q75N90 2809 aa5.55□□□□□ -1.52
USP4-211ENST00000485450 RPL11P62913 178 aaKnown RBP5.55□□□□□ -1.52
USP4-211ENST00000485450 C11orf44Q8N8P7 122 aa5.55□□□□□ -1.52
USP4-211ENST00000485450 IGHV4OR15-8A0A075B7B6 117 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 A0A087WW49 117 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 CCL24O00175 119 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 STHQ8IWL8 128 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 RETNQ9HD89 108 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 LINC00474Q9P2X8 69 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 PKD1L1Q8TDX9 2849 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 TRAV12-2A0A075B6T6 113 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 GHRHP01286 108 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 SS18Q15532 418 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 C19orf73Q9NVV2 129 aa5.54□□□□□ -1.52
USP4-211ENST00000485450 NDUFC2-KCTD14E9PQ53 114 aa5.53□□□□□ -1.52
USP4-211ENST00000485450 RPL39P62891 51 aaKnown RBP5.53□□□□□ -1.52
USP4-211ENST00000485450 APRG1Q8IVJ8 170 aa5.53□□□□□ -1.52
USP4-211ENST00000485450 TMEM61Q8N0U2 210 aa5.53□□□□□ -1.52
USP4-211ENST00000485450 ALMS1Q8TCU4 4167 aa5.53□□□□□ -1.52
USP4-211ENST00000485450 POLR2KP53803 58 aaKnown RBP5.53□□□□□ -1.52
USP4-211ENST00000485450 CIRBPQ14011 172 aaKnown RBP5.53□□□□□ -1.52
USP4-211ENST00000485450 C2CD3Q4AC94 2353 aa5.53□□□□□ -1.52
USP4-211ENST00000485450 MIAQ16674 131 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 C15orf32Q32M92 178 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 C9orf66Q5T8R8 295 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 BUB3O43684 328 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 KRTAP10-11P60412 298 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 DAZ2Q13117 558 aaKnown RBP5.52□□□□□ -1.53
USP4-211ENST00000485450 DAZ4Q86SG3 579 aaKnown RBP5.52□□□□□ -1.53
USP4-211ENST00000485450 RNF182Q8N6D2 247 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 C20orf173Q96LM9 149 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 DAZ1Q9NQZ3 744 aaKnown RBP5.52□□□□□ -1.53
USP4-211ENST00000485450 DAZ3Q9NR90 486 aaKnown RBP5.52□□□□□ -1.53
USP4-211ENST00000485450 SERP1Q9Y6X1 66 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 PRSS2P07478 247 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 MGPP08493 103 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 HOXD3P31249 432 aaPredicted RBP5.52□□□□□ -1.53
USP4-211ENST00000485450 ADAMTSL4-AS1Q5T5F5 129 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 BRK1Q8WUW1 75 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 S4R3C0 116 aa5.52□□□□□ -1.53
USP4-211ENST00000485450 A0A087WVE0 104 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 SOCS3O14543 225 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 TRBV12-3P01733 135 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 C9orf47Q6ZRZ4 202 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 MRPL53Q96EL3 112 aaKnown RBP5.51□□□□□ -1.53
USP4-211ENST00000485450 VCYO14598 125 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 INAFM2P0DMQ5 153 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 MED14OSP0DP75 135 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 C1orf158Q8N1D5 194 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 IGHV3-64A0A075B6Q5 118 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 H7BZZ5 65 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 NDUFC2O95298 119 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 FAM222AQ5U5X8 452 aa5.51□□□□□ -1.53
USP4-211ENST00000485450 COX7A2LO14548 114 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 IGHV3-30-3P0DP02 117 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 SYNJ2BPP57105 145 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 ECSCRQ19T08 205 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 NPC2P61916 151 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 HIST2H2BDQ6DRA6 164 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 Q6JHZ5 121 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 KIF25-AS1Q9Y6Z4 181 aa5.5□□□□□ -1.53
USP4-211ENST00000485450 LINC00315P59091 139 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 PHLDA3Q9Y5J5 127 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 TRBV27A0A0K0K1C4 114 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 USP17L23D6RBM5 183 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 PRR9Q5T870 116 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 LENEPQ9Y5L5 61 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 WNK2Q9Y3S1 2297 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 PMAIP1Q13794 54 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 DEFB114Q30KQ6 69 aa5.49□□□□□ -1.53
USP4-211ENST00000485450 SONP18583 2426 aaKnown RBP5.48□□□□□ -1.53
USP4-211ENST00000485450 SETD2Q9BYW2 2564 aaPredicted RBP5.48□□□□□ -1.53
USP4-211ENST00000485450 NXPH4O95158 308 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 BAALC-AS2P0C853 105 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 FAM229BQ4G0N7 80 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 SERTAD4-AS1Q5TG53 156 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 CSPG4Q6UVK1 2322 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 TIMM17BO60830 172 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 A0A0J9YXV3 536 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 TRBV6-5A0A0K0K1A5 114 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 S100A4P26447 101 aaKnown RBP5.48□□□□□ -1.53
USP4-211ENST00000485450 SLURP1P55000 103 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 Q6ZRU5 148 aa5.48□□□□□ -1.53
USP4-211ENST00000485450 OPRPNQ99935 248 aaPredicted RBP5.48□□□□□ -1.53
USP4-211ENST00000485450 NOTCH2Q04721 2471 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 SMIM26A0A096LP01 95 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 IGHV1-58A0A0C4DH39 117 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 CD164Q04900 197 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 UNQ9165/PRO28630Q6UXU0 137 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 NDUFA12Q9UI09 145 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 NACAE9PAV3 2078 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 TRAV21A0A0B4J279 112 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 SUMO4Q6EEV6 95 aa5.47□□□□□ -1.53
USP4-211ENST00000485450 MTORP42345 2549 aa5.46□□□□□ -1.53
USP4-211ENST00000485450 CSMD3Q7Z407 3707 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms