RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 NBEAL2Q6ZNJ1 2754 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 KDM5AP29375 1690 aaKnown RBP-0.93□□□□□ -2.56
VPS50-217ENST00000485140 TRBV7-3A0A075B6L6 115 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 TRBV7-4A0A0J9YYF1 115 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 Q8N8P6 123 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 USP9YO00507 2555 aaPredicted RBP-0.93□□□□□ -2.56
VPS50-217ENST00000485140 CFTRP13569 1480 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 GRIN2AQ12879 1464 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 RIMS1Q86UR5 1692 aaKnown RBP-0.94□□□□□ -2.56
VPS50-217ENST00000485140 ARHGEF12Q9NZN5 1544 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 NBPF19A0A087WUL8 3843 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 CEP152O94986 1710 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 SYS1-DBNDD2H3BUS1 97 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 SFT2D2O95562 160 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 MGPP08493 103 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 COX8AP10176 69 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 SPRR2AP35326 72 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 ARPC4P59998 168 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 RERGLQ9H628 205 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 PAIP2BQ9ULR5 123 aaKnown RBP-0.94□□□□□ -2.56
VPS50-217ENST00000485140 SERP1Q9Y6X1 66 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 BIRC6Q9NR09 4857 aa-0.94□□□□□ -2.56
VPS50-217ENST00000485140 BICRAQ9NZM4 1560 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 NSD3Q9BZ95 1437 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 HMGN4O00479 90 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 TMEM263Q8WUH6 116 aaKnown RBP-0.95□□□□□ -2.56
VPS50-217ENST00000485140 PPP3R2Q96LZ3 170 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 FAIMQ9NVQ4 179 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 FAT3Q8TDW7 4589 aa-0.95□□□□□ -2.56
VPS50-217ENST00000485140 DNAH6Q9C0G6 4158 aa-0.96□□□□□ -2.56
VPS50-217ENST00000485140 MRPL54Q6P161 138 aaKnown RBP-0.96□□□□□ -2.56
VPS50-217ENST00000485140 USMG5Q96IX5 58 aa-0.96□□□□□ -2.56
VPS50-217ENST00000485140 NAA60Q9H7X0 242 aa-0.96□□□□□ -2.56
VPS50-217ENST00000485140 IFNGP01579 166 aa-0.97□□□□□ -2.56
VPS50-217ENST00000485140 WHAMMP3Q1A5X7 153 aa-0.97□□□□□ -2.56
VPS50-217ENST00000485140 KLK9Q2XQG4 91 aa-0.97□□□□□ -2.56
VPS50-217ENST00000485140 SNRNP25Q9BV90 132 aaKnown RBP-0.97□□□□□ -2.56
VPS50-217ENST00000485140 CELSR3Q9NYQ7 3312 aa-0.97□□□□□ -2.56
VPS50-217ENST00000485140 ZFHX3Q15911 3703 aa-0.97□□□□□ -2.57
VPS50-217ENST00000485140 ITPR3Q14573 2671 aa-0.97□□□□□ -2.57
VPS50-217ENST00000485140 TULP4Q9NRJ4 1543 aa-0.98□□□□□ -2.57
VPS50-217ENST00000485140 SETBP1Q9Y6X0 1596 aa-0.98□□□□□ -2.57
VPS50-217ENST00000485140 DNHD1Q96M86 4753 aa-0.98□□□□□ -2.57
VPS50-217ENST00000485140 SPRR2EP22531 72 aa-0.98□□□□□ -2.57
VPS50-217ENST00000485140 UBA52P62987 128 aaKnown RBP-0.98□□□□□ -2.57
VPS50-217ENST00000485140 LSM10Q969L4 123 aaKnown RBP-0.98□□□□□ -2.57
VPS50-217ENST00000485140 COL12A1Q99715 3063 aa-0.98□□□□□ -2.57
VPS50-217ENST00000485140 TACC2O95359 2948 aa-0.99□□□□□ -2.57
VPS50-217ENST00000485140 SSSCA1O60232 199 aa-0.99□□□□□ -2.57
VPS50-217ENST00000485140 KRTAP6-2Q3LI66 62 aa-0.99□□□□□ -2.57
VPS50-217ENST00000485140 C10orf113Q5VZT2 155 aa-0.99□□□□□ -2.57
VPS50-217ENST00000485140 TSLPQ969D9 159 aa-0.99□□□□□ -2.57
VPS50-217ENST00000485140 NXT2Q9NPJ8 142 aaKnown RBP-0.99□□□□□ -2.57
VPS50-217ENST00000485140 WDR87Q6ZQQ6 2873 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 FAM25AB3EWG3 89 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 FAM25CB3EWG5 89 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 FAM25GB3EWG6 89 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 C8orf59Q8N0T1 100 aaPredicted RBP-1□□□□□ -2.57
VPS50-217ENST00000485140 FDCSPQ8NFU4 85 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 MYOZ3Q8TDC0 251 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 SPANXDQ9BXN6 97 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 UQCR10Q9UDW1 63 aa-1□□□□□ -2.57
VPS50-217ENST00000485140 CPSF1Q10570 1443 aaKnown RBP-1□□□□□ -2.57
VPS50-217ENST00000485140 PSME4Q14997 1843 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 LINC00959A0A1B0GUT2 108 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 MIF4GDA9UHW6 222 aaKnown RBP-1.01□□□□□ -2.57
VPS50-217ENST00000485140 IGLC1P0CG04 106 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 SELENOWP63302 87 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 DEFB135Q30KP9 77 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 Q56UQ5 140 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 MAGI1Q96QZ7 1491 aaPredicted RBP-1.01□□□□□ -2.57
VPS50-217ENST00000485140 KIAA0556O60303 1618 aa-1.01□□□□□ -2.57
VPS50-217ENST00000485140 CHKB-CPT1BH3BT56 60 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 BTAF1O14981 1849 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 MYOM1P52179 1685 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 NAIPQ13075 1403 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 MEIG1Q5JSS6 88 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 COMMD6Q7Z4G1 85 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 MYO18BQ8IUG5 2567 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 ARL11Q969Q4 196 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 APLNQ9ULZ1 77 aa-1.02□□□□□ -2.57
VPS50-217ENST00000485140 FASNP49327 2511 aaKnown RBP-1.03□□□□□ -2.57
VPS50-217ENST00000485140 TCHHQ07283 1943 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 MUC17Q685J3 4493 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 APOC2P02655 101 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 FAM167A-AS1Q96KT0 104 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 SPRR4Q96PI1 79 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 PRO1933Q9H354 126 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 HTTP42858 3142 aa-1.03□□□□□ -2.57
VPS50-217ENST00000485140 BTG2P78543 158 aa-1.04□□□□□ -2.58
VPS50-217ENST00000485140 C5orf38Q86SI9 138 aa-1.04□□□□□ -2.58
VPS50-217ENST00000485140 LINC01600Q96MT4 127 aa-1.04□□□□□ -2.58
VPS50-217ENST00000485140 CPSF4LA6NMK7 179 aaKnown RBP-1.05□□□□□ -2.58
VPS50-217ENST00000485140 CATR1Q13166 79 aa-1.05□□□□□ -2.58
VPS50-217ENST00000485140 ARL2-SNX15V9GYD0 113 aa-1.05□□□□□ -2.58
VPS50-217ENST00000485140 CCDC141Q6ZP82 1450 aa-1.05□□□□□ -2.58
VPS50-217ENST00000485140 SMG6Q86US8 1419 aaKnown RBP-1.06□□□□□ -2.58
VPS50-217ENST00000485140 RIF1Q5UIP0 2472 aaKnown RBP-1.06□□□□□ -2.58
VPS50-217ENST00000485140 MYH7P12883 1935 aa-1.06□□□□□ -2.58
VPS50-217ENST00000485140 FAM223AQ8IWN6 122 aa-1.06□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms