RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SMIM27A0A1W2PRY6 76 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 SMKR1H3BMG3 65 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 NUPR1O60356 82 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 PMCHP20382 165 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 FOXI1Q12951 378 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 AMMECR1LQ6DCA0 310 aa8.97□□□□□ -0.97
UPF3A-204ENST00000475218 RNASEKQ6P5S7 137 aaKnown RBP8.97□□□□□ -0.97
UPF3A-204ENST00000475218 TRBV27A0A0K0K1C4 114 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 LINC00310P59036 64 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 RPL37AP61513 92 aaKnown RBP8.96□□□□□ -0.97
UPF3A-204ENST00000475218 COL5A1-AS1Q5SY13 56 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 NRACQ8N912 160 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 ST20Q9HBF5 79 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 NAT8BQ9UHF3 227 aa8.96□□□□□ -0.97
UPF3A-204ENST00000475218 HMCN2Q8NDA2 5059 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 IGHV3-64A0A075B6Q5 118 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 DLEU1O43261 78 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 PMCHL1Q16048 86 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 HIGD2BQ4VC39 106 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 TMEM136Q6ZRR5 245 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 SPACA4Q8TDM5 124 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 BORCS7Q96B45 105 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 MRAP2Q96G30 205 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 UQCR10Q9UDW1 63 aa8.96□□□□□ -0.98
UPF3A-204ENST00000475218 ZNF25P17030 456 aaPredicted RBP8.95□□□□□ -0.98
UPF3A-204ENST00000475218 OR5A1Q8NGJ0 315 aa8.95□□□□□ -0.98
UPF3A-204ENST00000475218 GVQW2A0A096LPI5 108 aaPredicted RBP8.94□□□□□ -0.98
UPF3A-204ENST00000475218 LINC00959A0A1B0GUT2 108 aa8.94□□□□□ -0.98
UPF3A-204ENST00000475218 ATP5L2Q7Z4Y8 100 aa8.94□□□□□ -0.98
UPF3A-204ENST00000475218 A0A087WYN8 130 aa8.94□□□□□ -0.98
UPF3A-204ENST00000475218 CDC42SE2Q9NRR3 84 aa8.94□□□□□ -0.98
UPF3A-204ENST00000475218 AP5S1Q9NUS5 200 aa8.94□□□□□ -0.98
UPF3A-204ENST00000475218 RIGQ13278 110 aa8.93□□□□□ -0.98
UPF3A-204ENST00000475218 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.92□□□□□ -0.98
UPF3A-204ENST00000475218 CCL25O15444 150 aa8.92□□□□□ -0.98
UPF3A-204ENST00000475218 XCL1P47992 114 aa8.92□□□□□ -0.98
UPF3A-204ENST00000475218 COX6A2Q02221 97 aa8.92□□□□□ -0.98
UPF3A-204ENST00000475218 PRSS3P2Q8NHM4 247 aa8.92□□□□□ -0.98
UPF3A-204ENST00000475218 PAM16Q9Y3D7 125 aa8.92□□□□□ -0.98
UPF3A-204ENST00000475218 OXTP01178 125 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 MRPL51Q4U2R6 128 aaKnown RBP8.91□□□□□ -0.98
UPF3A-204ENST00000475218 LINC00526Q96FQ7 95 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 PLAC8Q9NZF1 115 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 CBY1Q9Y3M2 126 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 KRTDAPP60985 99 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 FAM104BQ5XKR9 115 aa8.91□□□□□ -0.98
UPF3A-204ENST00000475218 SUMO2P61956 95 aaKnown RBP8.9□□□□□ -0.98
UPF3A-204ENST00000475218 SPATA45Q537H7 98 aa8.9□□□□□ -0.98
UPF3A-204ENST00000475218 VCYO14598 125 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 IGLC3P0DOY3 106 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 G0S2P27469 103 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 FAM104AQ969W3 186 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 TMEM101Q96IK0 257 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 UBE2D4Q9Y2X8 147 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 ORAOV1Q8WV07 137 aa8.89□□□□□ -0.99
UPF3A-204ENST00000475218 A0A096LNI7 61 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 A0A1B0GXF2 115 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 C3orf79P0CE67 100 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 CAMPP49913 170 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 RNASE13Q5GAN3 156 aaKnown RBP8.88□□□□□ -0.99
UPF3A-204ENST00000475218 CD164L2Q6UWJ8 174 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 C18orf32Q8TCD1 76 aa8.88□□□□□ -0.99
UPF3A-204ENST00000475218 CSDC2Q9Y534 153 aaKnown RBP8.88□□□□□ -0.99
UPF3A-204ENST00000475218 HSBP1O75506 76 aa8.87□□□□□ -0.99
UPF3A-204ENST00000475218 MT1HL1P0DM35 61 aa8.87□□□□□ -0.99
UPF3A-204ENST00000475218 LAMTOR2Q9Y2Q5 125 aa8.87□□□□□ -0.99
UPF3A-204ENST00000475218 IGHV1-58A0A0C4DH39 117 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 IGKV2-24A0A0C4DH68 120 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 Q6ZUT4 128 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 CHCHD1Q96BP2 118 aaKnown RBP8.86□□□□□ -0.99
UPF3A-204ENST00000475218 FCER1GP30273 86 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 SS18Q15532 418 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 MRPL54Q6P161 138 aaKnown RBP8.86□□□□□ -0.99
UPF3A-204ENST00000475218 Q6ZN92 141 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 DPH3Q96FX2 82 aa8.86□□□□□ -0.99
UPF3A-204ENST00000475218 PPP1R17O96001 155 aa8.85□□□□□ -0.99
UPF3A-204ENST00000475218 RPL32P62910 135 aaKnown RBP8.85□□□□□ -0.99
UPF3A-204ENST00000475218 MAJINQ3KP22 176 aa8.85□□□□□ -0.99
UPF3A-204ENST00000475218 C20orf78Q9BR46 151 aa8.85□□□□□ -0.99
UPF3A-204ENST00000475218 ALKBH7Q9BT30 221 aaPredicted RBP8.85□□□□□ -0.99
UPF3A-204ENST00000475218 TNFRSF6BO95407 300 aa8.84□□□□□ -0.99
UPF3A-204ENST00000475218 NPYP01303 97 aa8.84□□□□□ -0.99
UPF3A-204ENST00000475218 RPL39P62891 51 aaKnown RBP8.84□□□□□ -0.99
UPF3A-204ENST00000475218 KIR2DL4Q99706 377 aa8.84□□□□□ -0.99
UPF3A-204ENST00000475218 A0A1B0GW15 77 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 CKS2P33552 79 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 HBBP68871 147 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 KIAA1644Q3SXP7 199 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 CARD19Q96LW7 228 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 TIMM21Q9BVV7 248 aa8.84□□□□□ -1
UPF3A-204ENST00000475218 D6R8Y8 96 aa8.83□□□□□ -1
UPF3A-204ENST00000475218 STPG4Q8N801 248 aa8.83□□□□□ -1
UPF3A-204ENST00000475218 SMIM2Q9BVW6 85 aa8.83□□□□□ -1
UPF3A-204ENST00000475218 NPSP0C0P6 89 aa8.82□□□□□ -1
UPF3A-204ENST00000475218 BATFQ16520 125 aa8.82□□□□□ -1
UPF3A-204ENST00000475218 ANKRD39Q53RE8 183 aa8.82□□□□□ -1
UPF3A-204ENST00000475218 Q6ZRU5 148 aa8.82□□□□□ -1
UPF3A-204ENST00000475218 OPRPNQ99935 248 aaPredicted RBP8.82□□□□□ -1
UPF3A-204ENST00000475218 TNXBP22105 4242 aa8.82□□□□□ -1
UPF3A-204ENST00000475218 IGLV4-69A0A075B6H9 119 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 232.6 ms