RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 IFI27P40305 119 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-203ENST00000474056 Q6ZRU5 148 aa11.31□□□□□ -0.6
UPF3A-203ENST00000474056 STPG4Q8N801 248 aa11.31□□□□□ -0.6
UPF3A-203ENST00000474056 IFITM10A6NMD0 228 aa11.3□□□□□ -0.6
UPF3A-203ENST00000474056 IMMP2LQ96T52 175 aa11.3□□□□□ -0.6
UPF3A-203ENST00000474056 IGLV4-3A0A075B6K6 122 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 IGHV3OR16-9A0A0B4J2B5 98 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 APOMO95445 188 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 Q8N8P6 123 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 CAMK2N2Q96S95 79 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 PKIGQ9Y2B9 76 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 PYGO1Q9Y3Y4 419 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 SPAG11BQ08648 103 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 COMMD7Q86VX2 200 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 C2orf48Q96LS8 159 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 SEC11CQ9BY50 192 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 CTDSP1Q9GZU7 261 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 OXTP01178 125 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 C2orf66Q6UXQ4 117 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 C7orf33Q8WU49 177 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00474Q9P2X8 69 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 KIAA1644Q3SXP7 199 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 OR10D4PQ8NGN7 298 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 TMEM141Q96I45 108 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 LOC107984640A0A0U1RRK4 108 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 PTTG1IPP53801 180 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 GAGE2BQ13066 116 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 TRAV9-1A0A075B6T8 112 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-203ENST00000474056 ORMDL2Q53FV1 153 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00242Q5T6M2 205 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 ZC2HC1BQ5TFG8 222 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 TEX43Q6ZNM6 134 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 TGIF2-C20orf24A0A0A6YYL0 155 aa11.23□□□□□ -0.61
UPF3A-203ENST00000474056 NXT2Q9NPJ8 142 aaKnown RBP11.23□□□□□ -0.61
UPF3A-203ENST00000474056 A0A0J9YXV3 536 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 UBE2D1P51668 147 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00173Q6ZV60 143 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 K7EMI3 77 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 RPL18AQ02543 176 aaKnown RBP11.21□□□□□ -0.61
UPF3A-203ENST00000474056 C10orf91Q5T1B1 145 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 AMELXQ99217 191 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 A0A087WZ39 114 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 S100PP25815 95 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 PRR3P79522 188 aaKnown RBP11.2□□□□□ -0.62
UPF3A-203ENST00000474056 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 C10orf25Q5T742 122 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 C2orf88Q9BSF0 95 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 MRPL35Q9NZE8 188 aaKnown RBP11.2□□□□□ -0.62
UPF3A-203ENST00000474056 A0A1W2PNN7 141 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 IGIPA6NJ69 53 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 NDUFA1O15239 70 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 Q6ZN92 141 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 F8WDY8 70 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 KIAA0087Q14695 138 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 UNQ6190/PRO20217Q6UXQ8 127 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 GNB1LQ9BYB4 327 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 VCX2Q9H322 139 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 CARHSP1Q9Y2V2 147 aaKnown RBP11.18□□□□□ -0.62
UPF3A-203ENST00000474056 NPSP0C0P6 89 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 TOMM6Q96B49 74 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 C6orf48Q9UBA6 75 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 RHEBQ15382 184 aa11.16□□□□□ -0.62
UPF3A-203ENST00000474056 C9orf116Q5BN46 136 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-203ENST00000474056 RPS10P5Q9NQ39 176 aa11.16□□□□□ -0.62
UPF3A-203ENST00000474056 FAM19A3Q7Z5A8 133 aa11.15□□□□□ -0.62
UPF3A-203ENST00000474056 TIMM17AQ99595 171 aa11.15□□□□□ -0.62
UPF3A-203ENST00000474056 ALKBH7Q9BT30 221 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-203ENST00000474056 COX19Q49B96 90 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 LINC01561Q8N1V8 128 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 HMCN2Q8NDA2 5059 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 TLX1NBP0CAT3 122 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 MT1HL1P0DM35 61 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 G0S2P27469 103 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 C2orf82Q6UX34 121 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 Q6ZRP5 223 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 MRPL18Q9H0U6 180 aaKnown RBP11.13□□□□□ -0.63
UPF3A-203ENST00000474056 LINC01546A6NGU7 62 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 MT-ND6P03923 174 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 FABP9Q0Z7S8 132 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 PAPPA-AS1Q5QFB9 102 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 TNXBP22105 4242 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 PHF5AQ7RTV0 110 aaKnown RBP11.11□□□□□ -0.63
UPF3A-203ENST00000474056 ERASQ7Z444 233 aa11.11□□□□□ -0.63
UPF3A-203ENST00000474056 TRBV30A0A0K0K1B3 111 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 HERVK_113P63121 156 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 GAGE2EQ4V326 116 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 SCGB3A1Q96QR1 104 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 GAGE2DQ9UEU5 116 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 CDKN2A-AS1Q9UH64 79 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 FAM168BA1KXE4 195 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 SEC11AP67812 179 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 TOMM7Q9P0U1 55 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 APOC3P02656 99 aa11.08□□□□□ -0.64
UPF3A-203ENST00000474056 SERTAD4-AS1Q5TG53 156 aa11.08□□□□□ -0.64
UPF3A-203ENST00000474056 PACRGQ96M98 296 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-203ENST00000474056 PRSS2P07478 247 aa11.07□□□□□ -0.64
UPF3A-203ENST00000474056 FA2HQ7L5A8 372 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms