RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SMIM2Q9BVW6 85 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 RPL32P62910 135 aaKnown RBP10.36□□□□□ -0.75
USP40-212ENST00000473191 PNRC1Q12796 327 aaPredicted RBP10.36□□□□□ -0.75
USP40-212ENST00000473191 SVBPQ8N300 66 aa10.36□□□□□ -0.75
USP40-212ENST00000473191 TIMM21Q9BVV7 248 aa10.36□□□□□ -0.75
USP40-212ENST00000473191 A0A1B0GW15 77 aa10.35□□□□□ -0.75
USP40-212ENST00000473191 CAMK2N2Q96S95 79 aa10.35□□□□□ -0.75
USP40-212ENST00000473191 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.34□□□□□ -0.75
USP40-212ENST00000473191 SNAPINO95295 136 aa10.34□□□□□ -0.75
USP40-212ENST00000473191 LINC00474Q9P2X8 69 aa10.34□□□□□ -0.75
USP40-212ENST00000473191 LOC107984640A0A0U1RRK4 108 aa10.33□□□□□ -0.76
USP40-212ENST00000473191 TMEM18Q96B42 140 aa10.33□□□□□ -0.76
USP40-212ENST00000473191 IGHV3OR16-9A0A0B4J2B5 98 aa10.32□□□□□ -0.76
USP40-212ENST00000473191 SPAG11BQ08648 103 aa10.32□□□□□ -0.76
USP40-212ENST00000473191 APOMO95445 188 aa10.31□□□□□ -0.76
USP40-212ENST00000473191 SMAGPQ0VAQ4 97 aa10.31□□□□□ -0.76
USP40-212ENST00000473191 C10orf25Q5T742 122 aa10.31□□□□□ -0.76
USP40-212ENST00000473191 TMEM136Q6ZRR5 245 aa10.31□□□□□ -0.76
USP40-212ENST00000473191 LINC01600Q96MT4 127 aa10.31□□□□□ -0.76
USP40-212ENST00000473191 MRPS36P82909 103 aaKnown RBP10.3□□□□□ -0.76
USP40-212ENST00000473191 RPL18AQ02543 176 aaKnown RBP10.3□□□□□ -0.76
USP40-212ENST00000473191 SRSF9Q13242 221 aaKnown RBP eCLIP10.3□□□□□ -0.76
USP40-212ENST00000473191 RHEBQ15382 184 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 C9orf116Q5BN46 136 aaPredicted RBP10.3□□□□□ -0.76
USP40-212ENST00000473191 ORMDL3Q8N138 153 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 ORAOV1Q8WV07 137 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 C2orf48Q96LS8 159 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 PRELID3AQ96N28 172 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 SPANXA1Q9NS26 97 aa10.3□□□□□ -0.76
USP40-212ENST00000473191 LOC389332A0A1B0GUA5 103 aa10.29□□□□□ -0.76
USP40-212ENST00000473191 S100A8P05109 93 aa10.29□□□□□ -0.76
USP40-212ENST00000473191 ZC2HC1BQ5TFG8 222 aa10.29□□□□□ -0.76
USP40-212ENST00000473191 IFITM10A6NMD0 228 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 PPBPP02775 128 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 MT-ND4LP03901 98 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 Q6ZRP5 223 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 PHF5AQ7RTV0 110 aaKnown RBP10.28□□□□□ -0.76
USP40-212ENST00000473191 ATP5L2Q7Z4Y8 100 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 RPS10P5Q9NQ39 176 aa10.28□□□□□ -0.76
USP40-212ENST00000473191 IGLV4-3A0A075B6K6 122 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 FAM168BA1KXE4 195 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 SPINK6Q6UWN8 80 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 UNQ6190/PRO20217Q6UXQ8 127 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 OR10D4PQ8NGN7 298 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 PKIGQ9Y2B9 76 aa10.27□□□□□ -0.77
USP40-212ENST00000473191 KRTAP11-1Q8IUC1 163 aa10.26□□□□□ -0.77
USP40-212ENST00000473191 ANAPC16Q96DE5 110 aa10.26□□□□□ -0.77
USP40-212ENST00000473191 C6orf48Q9UBA6 75 aa10.26□□□□□ -0.77
USP40-212ENST00000473191 PRSS47A8MTI9 375 aa10.25□□□□□ -0.77
USP40-212ENST00000473191 KIAA0087Q14695 138 aa10.25□□□□□ -0.77
USP40-212ENST00000473191 LINC00242Q5T6M2 205 aa10.25□□□□□ -0.77
USP40-212ENST00000473191 MRPL35Q9NZE8 188 aaKnown RBP10.25□□□□□ -0.77
USP40-212ENST00000473191 PSORS1C2Q9UIG4 136 aa10.25□□□□□ -0.77
USP40-212ENST00000473191 RAB5AP20339 215 aa10.24□□□□□ -0.77
USP40-212ENST00000473191 IFI27P40305 119 aaPredicted RBP10.24□□□□□ -0.77
USP40-212ENST00000473191 KRTAP10-8P60410 259 aa10.24□□□□□ -0.77
USP40-212ENST00000473191 RNF151Q2KHN1 245 aa10.24□□□□□ -0.77
USP40-212ENST00000473191 CTDSP1Q9GZU7 261 aa10.24□□□□□ -0.77
USP40-212ENST00000473191 LINC00173Q6ZV60 143 aa10.23□□□□□ -0.77
USP40-212ENST00000473191 KRTAP7-1Q8IUC3 87 aa10.23□□□□□ -0.77
USP40-212ENST00000473191 PYGO1Q9Y3Y4 419 aa10.23□□□□□ -0.77
USP40-212ENST00000473191 NDUFA1O15239 70 aa10.22□□□□□ -0.77
USP40-212ENST00000473191 C2orf82Q6UX34 121 aa10.22□□□□□ -0.77
USP40-212ENST00000473191 MAP1LC3AQ9H492 121 aa10.22□□□□□ -0.77
USP40-212ENST00000473191 A0A087WZ39 114 aa10.21□□□□□ -0.77
USP40-212ENST00000473191 S100PP25815 95 aa10.21□□□□□ -0.77
USP40-212ENST00000473191 UBE2D1P51668 147 aa10.21□□□□□ -0.77
USP40-212ENST00000473191 Q8N8P6 123 aa10.21□□□□□ -0.77
USP40-212ENST00000473191 TMEM141Q96I45 108 aa10.21□□□□□ -0.77
USP40-212ENST00000473191 LRP2P98164 4655 aa10.21□□□□□ -0.78
USP40-212ENST00000473191 TGIF2-C20orf24A0A0A6YYL0 155 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 SCO1O75880 301 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 GAGE2EQ4V326 116 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 C1orf137Q5JT78 98 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 C2orf66Q6UXQ4 117 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 SMCO4Q9NRQ5 59 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 GAGE2DQ9UEU5 116 aa10.2□□□□□ -0.78
USP40-212ENST00000473191 MT-ND6P03923 174 aa10.19□□□□□ -0.78
USP40-212ENST00000473191 TLX1NBP0CAT3 122 aa10.19□□□□□ -0.78
USP40-212ENST00000473191 REG3GQ6UW15 175 aa10.19□□□□□ -0.78
USP40-212ENST00000473191 TEX43Q6ZNM6 134 aa10.19□□□□□ -0.78
USP40-212ENST00000473191 FAM19A5Q7Z5A7 132 aaPredicted RBP10.19□□□□□ -0.78
USP40-212ENST00000473191 LAMTOR2Q9Y2Q5 125 aa10.19□□□□□ -0.78
USP40-212ENST00000473191 CBLN2Q8IUK8 224 aa10.18□□□□□ -0.78
USP40-212ENST00000473191 IMMP2LQ96T52 175 aa10.18□□□□□ -0.78
USP40-212ENST00000473191 AMELXQ99217 191 aa10.18□□□□□ -0.78
USP40-212ENST00000473191 IGIPA6NJ69 53 aa10.17□□□□□ -0.78
USP40-212ENST00000473191 F8WDY8 70 aa10.17□□□□□ -0.78
USP40-212ENST00000473191 KIAA1644Q3SXP7 199 aa10.17□□□□□ -0.78
USP40-212ENST00000473191 CYSLTR1Q9Y271 337 aa10.17□□□□□ -0.78
USP40-212ENST00000473191 C9orf129Q5T035 196 aaKnown RBP10.15□□□□□ -0.78
USP40-212ENST00000473191 VCX2Q9H322 139 aa10.14□□□□□ -0.79
USP40-212ENST00000473191 TRAV9-1A0A075B6T8 112 aa10.13□□□□□ -0.79
USP40-212ENST00000473191 IGLV7-43P04211 117 aa10.13□□□□□ -0.79
USP40-212ENST00000473191 ORMDL2Q53FV1 153 aa10.13□□□□□ -0.79
USP40-212ENST00000473191 C2orf88Q9BSF0 95 aa10.13□□□□□ -0.79
USP40-212ENST00000473191 TOMM7Q9P0U1 55 aa10.13□□□□□ -0.79
USP40-212ENST00000473191 TRBV30A0A0K0K1B3 111 aa10.12□□□□□ -0.79
USP40-212ENST00000473191 Q6ZN92 141 aa10.12□□□□□ -0.79
USP40-212ENST00000473191 RNF213Q63HN8 5207 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms