RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 STPG4Q8N801 248 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 C2orf48Q96LS8 159 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 CTDSP1Q9GZU7 261 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 FAT3Q8TDW7 4589 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 HMCN2Q8NDA2 5059 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 IGHV3OR16-9A0A0B4J2B5 98 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 LOC389332A0A1B0GUA5 103 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 IFITM10A6NMD0 228 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 HNRNPA3P51991 378 aaKnown RBP7.54□□□□□ -1.2
SYNE1-221ENST00000472563 Q6ZRU5 148 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 Q8N8P6 123 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 C7orf33Q8WU49 177 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 PKHD1L1Q86WI1 4243 aa7.54□□□□□ -1.2
SYNE1-221ENST00000472563 OR10D4PQ8NGN7 298 aa7.53□□□□□ -1.2
SYNE1-221ENST00000472563 CAMK2N2Q96S95 79 aa7.53□□□□□ -1.2
SYNE1-221ENST00000472563 IGLV4-3A0A075B6K6 122 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 TRAV9-1A0A075B6T8 112 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 LOC107984640A0A0U1RRK4 108 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 F8WDY8 70 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 K7EMI3 77 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 SPAG11BQ08648 103 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 SEC11CQ9BY50 192 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 CYSLTR1Q9Y271 337 aa7.52□□□□□ -1.21
SYNE1-221ENST00000472563 PTTG1IPP53801 180 aa7.51□□□□□ -1.21
SYNE1-221ENST00000472563 RNF151Q2KHN1 245 aa7.51□□□□□ -1.21
SYNE1-221ENST00000472563 ORMDL2Q53FV1 153 aa7.51□□□□□ -1.21
SYNE1-221ENST00000472563 C2orf66Q6UXQ4 117 aa7.51□□□□□ -1.21
SYNE1-221ENST00000472563 TMEM141Q96I45 108 aa7.51□□□□□ -1.21
SYNE1-221ENST00000472563 NXT2Q9NPJ8 142 aaKnown RBP7.51□□□□□ -1.21
SYNE1-221ENST00000472563 TGIF2-C20orf24A0A0A6YYL0 155 aa7.5□□□□□ -1.21
SYNE1-221ENST00000472563 NPSP0C0P6 89 aa7.5□□□□□ -1.21
SYNE1-221ENST00000472563 LINC00242Q5T6M2 205 aa7.5□□□□□ -1.21
SYNE1-221ENST00000472563 TEX43Q6ZNM6 134 aa7.5□□□□□ -1.21
SYNE1-221ENST00000472563 ORAOV1Q8WV07 137 aa7.5□□□□□ -1.21
SYNE1-221ENST00000472563 A0A087WZ39 114 aa7.49□□□□□ -1.21
SYNE1-221ENST00000472563 IGIPA6NJ69 53 aa7.49□□□□□ -1.21
SYNE1-221ENST00000472563 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-221ENST00000472563 GAGE2BQ13066 116 aa7.49□□□□□ -1.21
SYNE1-221ENST00000472563 COMMD7Q86VX2 200 aa7.49□□□□□ -1.21
SYNE1-221ENST00000472563 MRPL35Q9NZE8 188 aaKnown RBP7.49□□□□□ -1.21
SYNE1-221ENST00000472563 S100PP25815 95 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 G0S2P27469 103 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 UBE2D1P51668 147 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 C10orf91Q5T1B1 145 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 Q6ZN92 141 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 VCX2Q9H322 139 aa7.48□□□□□ -1.21
SYNE1-221ENST00000472563 NDUFA1O15239 70 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 PRR3P79522 188 aaKnown RBP7.47□□□□□ -1.21
SYNE1-221ENST00000472563 KIAA1644Q3SXP7 199 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 LINC01561Q8N1V8 128 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 AMELXQ99217 191 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 C2orf88Q9BSF0 95 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 GNB1LQ9BYB4 327 aa7.47□□□□□ -1.21
SYNE1-221ENST00000472563 A0A0J9YXV3 536 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 KIAA0087Q14695 138 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 COX19Q49B96 90 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 PAPPA-AS1Q5QFB9 102 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 C10orf25Q5T742 122 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 LINC00173Q6ZV60 143 aa7.46□□□□□ -1.22
SYNE1-221ENST00000472563 CARHSP1Q9Y2V2 147 aaKnown RBP7.46□□□□□ -1.22
SYNE1-221ENST00000472563 A0A1W2PNN7 141 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 RPL18AQ02543 176 aaKnown RBP7.45□□□□□ -1.22
SYNE1-221ENST00000472563 RHEBQ15382 184 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 ZC2HC1BQ5TFG8 222 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 UNQ6190/PRO20217Q6UXQ8 127 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 FAM19A3Q7Z5A8 133 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 TOMM6Q96B49 74 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 TIMM17AQ99595 171 aa7.45□□□□□ -1.22
SYNE1-221ENST00000472563 ALKBH7Q9BT30 221 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-221ENST00000472563 MT-ND6P03923 174 aa7.44□□□□□ -1.22
SYNE1-221ENST00000472563 TLX1NBP0CAT3 122 aa7.44□□□□□ -1.22
SYNE1-221ENST00000472563 C9orf116Q5BN46 136 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-221ENST00000472563 SERTAD4-AS1Q5TG53 156 aa7.44□□□□□ -1.22
SYNE1-221ENST00000472563 Q6ZRP5 223 aa7.44□□□□□ -1.22
SYNE1-221ENST00000472563 C6orf48Q9UBA6 75 aa7.44□□□□□ -1.22
SYNE1-221ENST00000472563 LINC01546A6NGU7 62 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 LINC01549A6NIU2 74 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 MT1HL1P0DM35 61 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 SEC11AP67812 179 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 ERASQ7Z444 233 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 RPS10P5Q9NQ39 176 aa7.43□□□□□ -1.22
SYNE1-221ENST00000472563 TRBV30A0A0K0K1B3 111 aa7.42□□□□□ -1.22
SYNE1-221ENST00000472563 SPINK6Q6UWN8 80 aa7.42□□□□□ -1.22
SYNE1-221ENST00000472563 HERVK_113P63121 156 aa7.41□□□□□ -1.22
SYNE1-221ENST00000472563 FABP9Q0Z7S8 132 aa7.41□□□□□ -1.22
SYNE1-221ENST00000472563 SRSF9Q13242 221 aaKnown RBP eCLIP7.41□□□□□ -1.22
SYNE1-221ENST00000472563 C2orf82Q6UX34 121 aa7.41□□□□□ -1.22
SYNE1-221ENST00000472563 SCGB3A1Q96QR1 104 aa7.41□□□□□ -1.22
SYNE1-221ENST00000472563 MRPL18Q9H0U6 180 aaKnown RBP7.41□□□□□ -1.22
SYNE1-221ENST00000472563 PACRGQ96M98 296 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-221ENST00000472563 GEMIN7Q9H840 131 aaKnown RBP7.4□□□□□ -1.22
SYNE1-221ENST00000472563 CDKN2A-AS1Q9UH64 79 aa7.4□□□□□ -1.22
SYNE1-221ENST00000472563 NDUFC2-KCTD14E9PQ53 114 aa7.39□□□□□ -1.23
SYNE1-221ENST00000472563 PRSS2P07478 247 aa7.39□□□□□ -1.23
SYNE1-221ENST00000472563 C6orf226Q5I0X4 101 aa7.39□□□□□ -1.23
SYNE1-221ENST00000472563 FA2HQ7L5A8 372 aa7.39□□□□□ -1.23
SYNE1-221ENST00000472563 PHF5AQ7RTV0 110 aaKnown RBP7.39□□□□□ -1.23
SYNE1-221ENST00000472563 Q8IZM0 81 aa7.39□□□□□ -1.23
SYNE1-221ENST00000472563 CKS1BP61024 79 aa7.38□□□□□ -1.23
SYNE1-221ENST00000472563 GAGE2EQ4V326 116 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms