RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 F8WDY8 70 aa13.33□□□□□ -0.28
PTPN4-202ENST00000420482 NPYP01303 97 aa13.33□□□□□ -0.28
PTPN4-202ENST00000420482 IFITM10A6NMD0 228 aa13.32□□□□□ -0.28
PTPN4-202ENST00000420482 IFI27P40305 119 aaPredicted RBP13.32□□□□□ -0.28
PTPN4-202ENST00000420482 SPINK6Q6UWN8 80 aa13.32□□□□□ -0.28
PTPN4-202ENST00000420482 TMEM136Q6ZRR5 245 aa13.32□□□□□ -0.28
PTPN4-202ENST00000420482 RPL18AQ02543 176 aaKnown RBP13.31□□□□□ -0.28
PTPN4-202ENST00000420482 PNRC1Q12796 327 aaPredicted RBP13.31□□□□□ -0.28
PTPN4-202ENST00000420482 RNF151Q2KHN1 245 aa13.31□□□□□ -0.28
PTPN4-202ENST00000420482 REG3GQ6UW15 175 aa13.31□□□□□ -0.28
PTPN4-202ENST00000420482 PRELID3AQ96N28 172 aa13.31□□□□□ -0.28
PTPN4-202ENST00000420482 RAB14P61106 215 aa13.3□□□□□ -0.28
PTPN4-202ENST00000420482 ORAOV1Q8WV07 137 aa13.3□□□□□ -0.28
PTPN4-202ENST00000420482 TGIF2-C20orf24A0A0A6YYL0 155 aa13.29□□□□□ -0.28
PTPN4-202ENST00000420482 LINC01600Q96MT4 127 aa13.29□□□□□ -0.28
PTPN4-202ENST00000420482 LAMTOR2Q9Y2Q5 125 aa13.29□□□□□ -0.28
PTPN4-202ENST00000420482 IGHV3OR16-9A0A0B4J2B5 98 aa13.28□□□□□ -0.28
PTPN4-202ENST00000420482 NDUFA1O15239 70 aa13.28□□□□□ -0.28
PTPN4-202ENST00000420482 MT-ND4LP03901 98 aa13.28□□□□□ -0.28
PTPN4-202ENST00000420482 ANAPC16Q96DE5 110 aa13.28□□□□□ -0.28
PTPN4-202ENST00000420482 IMMP2LQ96T52 175 aa13.28□□□□□ -0.28
PTPN4-202ENST00000420482 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.27□□□□□ -0.29
PTPN4-202ENST00000420482 MRPL35Q9NZE8 188 aaKnown RBP13.27□□□□□ -0.29
PTPN4-202ENST00000420482 OPRPNQ99935 248 aaPredicted RBP13.26□□□□□ -0.29
PTPN4-202ENST00000420482 MAP1LC3AQ9H492 121 aa13.26□□□□□ -0.29
PTPN4-202ENST00000420482 PYGO1Q9Y3Y4 419 aa13.26□□□□□ -0.29
PTPN4-202ENST00000420482 C9orf116Q5BN46 136 aaPredicted RBP13.24□□□□□ -0.29
PTPN4-202ENST00000420482 FAM104AQ969W3 186 aa13.24□□□□□ -0.29
PTPN4-202ENST00000420482 PRSS47A8MTI9 375 aa13.23□□□□□ -0.29
PTPN4-202ENST00000420482 TMEM141Q96I45 108 aa13.23□□□□□ -0.29
PTPN4-202ENST00000420482 C2orf88Q9BSF0 95 aa13.23□□□□□ -0.29
PTPN4-202ENST00000420482 A0A0J9YXV3 536 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 LOC389332A0A1B0GUA5 103 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 A0A1W2PNN7 141 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 MT-ND6P03923 174 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 Q6ZN92 141 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 TEX43Q6ZNM6 134 aa13.22□□□□□ -0.29
PTPN4-202ENST00000420482 SRSF9Q13242 221 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPN4-202ENST00000420482 CYSLTR1Q9Y271 337 aa13.21□□□□□ -0.29
PTPN4-202ENST00000420482 IGLV4-3A0A075B6K6 122 aa13.2□□□□□ -0.3
PTPN4-202ENST00000420482 A0A087WZ39 114 aa13.2□□□□□ -0.3
PTPN4-202ENST00000420482 K7EMI3 77 aa13.2□□□□□ -0.3
PTPN4-202ENST00000420482 ORMDL2Q53FV1 153 aa13.2□□□□□ -0.3
PTPN4-202ENST00000420482 TLX1NBP0CAT3 122 aa13.19□□□□□ -0.3
PTPN4-202ENST00000420482 Q8N8P6 123 aa13.19□□□□□ -0.3
PTPN4-202ENST00000420482 G0S2P27469 103 aa13.18□□□□□ -0.3
PTPN4-202ENST00000420482 LINC00242Q5T6M2 205 aa13.18□□□□□ -0.3
PTPN4-202ENST00000420482 TNXBP22105 4242 aa13.17□□□□□ -0.3
PTPN4-202ENST00000420482 NPSP0C0P6 89 aa13.17□□□□□ -0.3
PTPN4-202ENST00000420482 C2orf66Q6UXQ4 117 aa13.17□□□□□ -0.3
PTPN4-202ENST00000420482 PSORS1C2Q9UIG4 136 aa13.17□□□□□ -0.3
PTPN4-202ENST00000420482 C1orf137Q5JT78 98 aa13.16□□□□□ -0.3
PTPN4-202ENST00000420482 UNQ6190/PRO20217Q6UXQ8 127 aa13.16□□□□□ -0.3
PTPN4-202ENST00000420482 LINC01561Q8N1V8 128 aa13.16□□□□□ -0.3
PTPN4-202ENST00000420482 PACRGQ96M98 296 aaPredicted RBP13.16□□□□□ -0.3
PTPN4-202ENST00000420482 CTDSP1Q9GZU7 261 aa13.16□□□□□ -0.3
PTPN4-202ENST00000420482 VCX2Q9H322 139 aa13.16□□□□□ -0.3
PTPN4-202ENST00000420482 NXT2Q9NPJ8 142 aaKnown RBP13.16□□□□□ -0.3
PTPN4-202ENST00000420482 TRBV30A0A0K0K1B3 111 aa13.15□□□□□ -0.3
PTPN4-202ENST00000420482 PAPPA-AS1Q5QFB9 102 aa13.15□□□□□ -0.3
PTPN4-202ENST00000420482 C10orf25Q5T742 122 aa13.15□□□□□ -0.3
PTPN4-202ENST00000420482 PHF5AQ7RTV0 110 aaKnown RBP13.15□□□□□ -0.3
PTPN4-202ENST00000420482 C6orf48Q9UBA6 75 aa13.15□□□□□ -0.3
PTPN4-202ENST00000420482 UBE2D1P51668 147 aa13.14□□□□□ -0.31
PTPN4-202ENST00000420482 PRSS2P07478 247 aa13.13□□□□□ -0.31
PTPN4-202ENST00000420482 GAGE2EQ4V326 116 aa13.13□□□□□ -0.31
PTPN4-202ENST00000420482 GAGE2DQ9UEU5 116 aa13.13□□□□□ -0.31
PTPN4-202ENST00000420482 LRP2P98164 4655 aa13.13□□□□□ -0.31
PTPN4-202ENST00000420482 KRTAP10-8P60410 259 aa13.12□□□□□ -0.31
PTPN4-202ENST00000420482 SEC11AP67812 179 aa13.12□□□□□ -0.31
PTPN4-202ENST00000420482 KIAA0087Q14695 138 aa13.12□□□□□ -0.31
PTPN4-202ENST00000420482 CKS1BP61024 79 aa13.1□□□□□ -0.31
PTPN4-202ENST00000420482 CLLU1Q5K131 121 aa13.1□□□□□ -0.31
PTPN4-202ENST00000420482 FAM19A5Q7Z5A7 132 aaPredicted RBP13.1□□□□□ -0.31
PTPN4-202ENST00000420482 AMELXQ99217 191 aa13.1□□□□□ -0.31
PTPN4-202ENST00000420482 NDUFC2-KCTD14E9PQ53 114 aa13.09□□□□□ -0.31
PTPN4-202ENST00000420482 DIRC1Q969H9 104 aa13.09□□□□□ -0.31
PTPN4-202ENST00000420482 C6orf226Q5I0X4 101 aa13.08□□□□□ -0.32
PTPN4-202ENST00000420482 UQCC3Q6UW78 93 aa13.08□□□□□ -0.32
PTPN4-202ENST00000420482 C2orf82Q6UX34 121 aa13.08□□□□□ -0.32
PTPN4-202ENST00000420482 TRAV9-1A0A075B6T8 112 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 FAM168BA1KXE4 195 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 IGIPA6NJ69 53 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 IGLV7-43P04211 117 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 HERVK_113P63121 156 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 LINC00173Q6ZV60 143 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 TOMM7Q9P0U1 55 aa13.07□□□□□ -0.32
PTPN4-202ENST00000420482 M0QXV9 152 aa13.06□□□□□ -0.32
PTPN4-202ENST00000420482 UBE2BP63146 152 aa13.06□□□□□ -0.32
PTPN4-202ENST00000420482 FAM19A3Q7Z5A8 133 aa13.06□□□□□ -0.32
PTPN4-202ENST00000420482 TIMM17AQ99595 171 aa13.06□□□□□ -0.32
PTPN4-202ENST00000420482 GEMIN7Q9H840 131 aaKnown RBP13.06□□□□□ -0.32
PTPN4-202ENST00000420482 Q8IZM0 81 aa13.05□□□□□ -0.32
PTPN4-202ENST00000420482 ALKBH7Q9BT30 221 aaPredicted RBP13.05□□□□□ -0.32
PTPN4-202ENST00000420482 RNF213Q63HN8 5207 aa13.05□□□□□ -0.32
PTPN4-202ENST00000420482 LINC01549A6NIU2 74 aa13.04□□□□□ -0.32
PTPN4-202ENST00000420482 S100PP25815 95 aa13.04□□□□□ -0.32
PTPN4-202ENST00000420482 ZC2HC1BQ5TFG8 222 aa13.04□□□□□ -0.32
PTPN4-202ENST00000420482 TOMM6Q96B49 74 aa13.03□□□□□ -0.32
PTPN4-202ENST00000420482 TMEM218A2RU14 115 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms