RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LINC01545Q5VT33 79 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 CD164L2Q6UWJ8 174 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 FAM19A3Q7Z5A8 133 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 VPS13DQ5THJ4 4388 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 PSCAO43653 123 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 DPM2O94777 84 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 SCGB1D1O95968 90 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 C6orf223Q8N319 242 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 LINC00469Q8N7U9 141 aa12.07□□□□□ -0.48
SDC1-203ENST00000403076 DNAH1Q9P2D7 4330 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 C11orf86A6NJI1 115 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 PLNP26678 52 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 ALMS1Q8TCU4 4167 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 IGKCP01834 107 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 TMEM170BQ5T4T1 132 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 C1orf134Q5TEV5 83 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 C5orf38Q86SI9 138 aa12.06□□□□□ -0.48
SDC1-203ENST00000403076 COX7A2LO14548 114 aa12.05□□□□□ -0.48
SDC1-203ENST00000403076 FOXI1Q12951 378 aa12.05□□□□□ -0.48
SDC1-203ENST00000403076 CDKN2A-AS1Q9UH64 79 aa12.05□□□□□ -0.48
SDC1-203ENST00000403076 IGHV3OR16-9A0A0B4J2B5 98 aa12.04□□□□□ -0.48
SDC1-203ENST00000403076 MALP21145 153 aa12.04□□□□□ -0.48
SDC1-203ENST00000403076 KRTAP26-1Q6PEX3 210 aa12.04□□□□□ -0.48
SDC1-203ENST00000403076 H3BRM9 83 aa12.03□□□□□ -0.48
SDC1-203ENST00000403076 ZNF22P17026 224 aaPredicted RBP12.03□□□□□ -0.48
SDC1-203ENST00000403076 JOSD1Q15040 202 aaPredicted RBP12.01□□□□□ -0.49
SDC1-203ENST00000403076 ATOH7Q8N100 152 aa12.01□□□□□ -0.49
SDC1-203ENST00000403076 IGLV5-45A0A087WSX0 123 aa12.01□□□□□ -0.49
SDC1-203ENST00000403076 A0A087WZ39 114 aa12.01□□□□□ -0.49
SDC1-203ENST00000403076 APOMO95445 188 aa12□□□□□ -0.49
SDC1-203ENST00000403076 SPINK8P0C7L1 97 aa12□□□□□ -0.49
SDC1-203ENST00000403076 Q6ZRN7 208 aaPredicted RBP11.99□□□□□ -0.49
SDC1-203ENST00000403076 MAPKAPK5-AS1Q8N8E1 139 aa11.99□□□□□ -0.49
SDC1-203ENST00000403076 CFAP161Q6P656 301 aa11.98□□□□□ -0.49
SDC1-203ENST00000403076 HERVK_113P61574 105 aa11.97□□□□□ -0.49
SDC1-203ENST00000403076 PYY3Q5JQD4 70 aa11.97□□□□□ -0.49
SDC1-203ENST00000403076 IGHV3-64A0A075B6Q5 118 aa11.96□□□□□ -0.49
SDC1-203ENST00000403076 IGHV1-58A0A0C4DH39 117 aa11.96□□□□□ -0.49
SDC1-203ENST00000403076 LECT2O14960 151 aa11.96□□□□□ -0.49
SDC1-203ENST00000403076 LINC01561Q8N1V8 128 aa11.96□□□□□ -0.49
SDC1-203ENST00000403076 TMEM223A0PJW6 202 aa11.96□□□□□ -0.5
SDC1-203ENST00000403076 ORAOV1Q8WV07 137 aa11.96□□□□□ -0.5
SDC1-203ENST00000403076 TOMM7Q9P0U1 55 aa11.96□□□□□ -0.5
SDC1-203ENST00000403076 SMIM1B2RUZ4 78 aa11.95□□□□□ -0.5
SDC1-203ENST00000403076 HSBP1L1C9JCN9 74 aa11.95□□□□□ -0.5
SDC1-203ENST00000403076 USP17L23D6RBM5 183 aa11.95□□□□□ -0.5
SDC1-203ENST00000403076 STPG4Q8N801 248 aa11.95□□□□□ -0.5
SDC1-203ENST00000403076 hDV102S1A0JD36 115 aa11.93□□□□□ -0.5
SDC1-203ENST00000403076 HIGD2BQ4VC39 106 aa11.93□□□□□ -0.5
SDC1-203ENST00000403076 ZNF561-AS1K7EIQ3 104 aa11.92□□□□□ -0.5
SDC1-203ENST00000403076 PRSS2P07478 247 aa11.92□□□□□ -0.5
SDC1-203ENST00000403076 C15orf56Q8N910 161 aa11.92□□□□□ -0.5
SDC1-203ENST00000403076 RTL8CO15255 209 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 SPAG11BQ08648 103 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 IGLV5-39A0A0G2JS06 123 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 WFDC2Q14508 124 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 MAJINQ3KP22 176 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 C14orf177Q52M58 125 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 C6orf226Q5I0X4 101 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 COX7B2Q8TF08 81 aa11.91□□□□□ -0.5
SDC1-203ENST00000403076 KMT2AQ03164 3969 aa11.9□□□□□ -0.5
SDC1-203ENST00000403076 SMIM6P0DI80 62 aa11.9□□□□□ -0.5
SDC1-203ENST00000403076 LINC00526Q96FQ7 95 aa11.9□□□□□ -0.5
SDC1-203ENST00000403076 DNAH6Q9C0G6 4158 aa11.89□□□□□ -0.51
SDC1-203ENST00000403076 A0A087WTM6 91 aa11.89□□□□□ -0.51
SDC1-203ENST00000403076 LRCOL1A6NCL2 159 aa11.89□□□□□ -0.51
SDC1-203ENST00000403076 LEPROTO15243 131 aa11.89□□□□□ -0.51
SDC1-203ENST00000403076 PLEKHB2Q96CS7 222 aa11.89□□□□□ -0.51
SDC1-203ENST00000403076 GVQW2A0A096LPI5 108 aaPredicted RBP11.88□□□□□ -0.51
SDC1-203ENST00000403076 E9PLD3 99 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 EREGO14944 169 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 TNP2Q05952 138 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 ANKRD39Q53RE8 183 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 Q8IZM0 81 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 VAMP8Q9BV40 100 aa11.88□□□□□ -0.51
SDC1-203ENST00000403076 J3QQQ9 107 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 LGALS3P17931 250 aaKnown RBP11.86□□□□□ -0.51
SDC1-203ENST00000403076 CKS1BP61024 79 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 KIAA0087Q14695 138 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 SACSQ9NZJ4 4579 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 NMUP48645 174 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 CDPF1Q6NVV7 123 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 PAM16Q9Y3D7 125 aa11.86□□□□□ -0.51
SDC1-203ENST00000403076 KMT2CQ8NEZ4 4911 aaKnown RBP11.85□□□□□ -0.51
SDC1-203ENST00000403076 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.85□□□□□ -0.51
SDC1-203ENST00000403076 S100A12P80511 92 aa11.85□□□□□ -0.51
SDC1-203ENST00000403076 NTN5Q8WTR8 489 aaPredicted RBP11.85□□□□□ -0.51
SDC1-203ENST00000403076 CAMK2N2Q96S95 79 aa11.85□□□□□ -0.51
SDC1-203ENST00000403076 IGKV2D-26A0A0A0MRZ7 120 aa11.84□□□□□ -0.51
SDC1-203ENST00000403076 SPATA45Q537H7 98 aa11.84□□□□□ -0.51
SDC1-203ENST00000403076 C2orf48Q96LS8 159 aa11.84□□□□□ -0.51
SDC1-203ENST00000403076 NDUFA1O15239 70 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 CXCL5P42830 114 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 TSPEAR-AS2P59090 65 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 C2orf82Q6UX34 121 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 Q8N814 137 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 NDUFA12Q9UI09 145 aa11.83□□□□□ -0.52
SDC1-203ENST00000403076 HYDINQ4G0P3 5121 aa11.82□□□□□ -0.52
SDC1-203ENST00000403076 LINC00336Q6ZUF6 198 aa11.82□□□□□ -0.52
SDC1-203ENST00000403076 F8WDY8 70 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms