RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 UBE2WQ96B02 151 aa10.23□□□□□ -0.77
HMGA1-203ENST00000374116 EIF4EBP3O60516 100 aaPredicted RBP10.22□□□□□ -0.77
HMGA1-203ENST00000374116 CMC4P56277 68 aaPredicted RBP10.22□□□□□ -0.77
HMGA1-203ENST00000374116 TSPEAR-AS2P59090 65 aa10.22□□□□□ -0.77
HMGA1-203ENST00000374116 C20orf203Q8NBC4 194 aa10.22□□□□□ -0.77
HMGA1-203ENST00000374116 COL7A1Q02388 2944 aa10.22□□□□□ -0.77
HMGA1-203ENST00000374116 C11orf72Q8NBR9 251 aa10.21□□□□□ -0.77
HMGA1-203ENST00000374116 IMUPQ9GZP8 106 aa10.21□□□□□ -0.77
HMGA1-203ENST00000374116 RETNQ9HD89 108 aa10.21□□□□□ -0.77
HMGA1-203ENST00000374116 A4D1N5 150 aa10.21□□□□□ -0.78
HMGA1-203ENST00000374116 A8MZ25 164 aa10.21□□□□□ -0.78
HMGA1-203ENST00000374116 PRM2P04554 102 aa10.2□□□□□ -0.78
HMGA1-203ENST00000374116 TGP01266 2768 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 IGHV3-73A0A0B4J1V6 119 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 J3QQQ9 107 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 DNAJC30Q96LL9 226 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 LEPROTO15243 131 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 DEFB135Q30KP9 77 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 SPANXCQ9NY87 97 aa10.19□□□□□ -0.78
HMGA1-203ENST00000374116 TENM3Q9P273 2699 aa10.18□□□□□ -0.78
HMGA1-203ENST00000374116 NACAE9PAV3 2078 aa10.18□□□□□ -0.78
HMGA1-203ENST00000374116 GIG44P09565 113 aaPredicted RBP10.18□□□□□ -0.78
HMGA1-203ENST00000374116 LGALS3P17931 250 aaKnown RBP10.18□□□□□ -0.78
HMGA1-203ENST00000374116 TMEM170BQ5T4T1 132 aa10.18□□□□□ -0.78
HMGA1-203ENST00000374116 B9D2Q9BPU9 175 aa10.18□□□□□ -0.78
HMGA1-203ENST00000374116 XCL2Q9UBD3 114 aa10.18□□□□□ -0.78
HMGA1-203ENST00000374116 TEX49A0A1B0GTD5 131 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 RS1O15537 224 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 C1orf158Q8N1D5 194 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 PYGO1Q9Y3Y4 419 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 IGHV3-53P01767 116 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 EMP1P54849 157 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 ZNRF2Q8NHG8 242 aa10.17□□□□□ -0.78
HMGA1-203ENST00000374116 TMEM101Q96IK0 257 aa10.16□□□□□ -0.78
HMGA1-203ENST00000374116 IGLV4-3A0A075B6K6 122 aa10.15□□□□□ -0.78
HMGA1-203ENST00000374116 ATP5G1P05496 136 aa10.15□□□□□ -0.78
HMGA1-203ENST00000374116 ACYP1P07311 99 aa10.15□□□□□ -0.78
HMGA1-203ENST00000374116 APOC4P55056 127 aa10.15□□□□□ -0.78
HMGA1-203ENST00000374116 Q6ZSN1 163 aa10.15□□□□□ -0.78
HMGA1-203ENST00000374116 OPRPNQ99935 248 aaPredicted RBP10.15□□□□□ -0.78
HMGA1-203ENST00000374116 TMEM223A0PJW6 202 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 C2orf82Q6UX34 121 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 IL17DQ8TAD2 202 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 PPDPFQ9H3Y8 114 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 A0A1B0GX51 115 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 TRIAP1O43715 76 aa10.14□□□□□ -0.79
HMGA1-203ENST00000374116 IGHV3OR16-12A0A075B7B8 117 aa10.13□□□□□ -0.79
HMGA1-203ENST00000374116 H7C423 109 aa10.13□□□□□ -0.79
HMGA1-203ENST00000374116 MUSTN1Q8IVN3 82 aa10.13□□□□□ -0.79
HMGA1-203ENST00000374116 KIR2DL5BQ8NHK3 375 aa10.13□□□□□ -0.79
HMGA1-203ENST00000374116 TM2D3Q9BRN9 247 aa10.13□□□□□ -0.79
HMGA1-203ENST00000374116 DNAH9Q9NYC9 4486 aa10.12□□□□□ -0.79
HMGA1-203ENST00000374116 C5orf47Q569G3 176 aa10.12□□□□□ -0.79
HMGA1-203ENST00000374116 OVOL2Q9BRP0 275 aa10.12□□□□□ -0.79
HMGA1-203ENST00000374116 CSDC2Q9Y534 153 aaKnown RBP10.12□□□□□ -0.79
HMGA1-203ENST00000374116 CSNK1G2-AS1Q8NCQ2 148 aa10.12□□□□□ -0.79
HMGA1-203ENST00000374116 CHCHD7Q9BUK0 85 aa10.12□□□□□ -0.79
HMGA1-203ENST00000374116 Q1RN00 199 aa10.11□□□□□ -0.79
HMGA1-203ENST00000374116 C3orf22Q8N5N4 141 aa10.11□□□□□ -0.79
HMGA1-203ENST00000374116 CHCHD5Q9BSY4 110 aa10.11□□□□□ -0.79
HMGA1-203ENST00000374116 Q9UF83 564 aa10.11□□□□□ -0.79
HMGA1-203ENST00000374116 ICOSQ9Y6W8 199 aa10.11□□□□□ -0.79
HMGA1-203ENST00000374116 LST1O00453 97 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 UQCRQO14949 82 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 DEFB4AO15263 64 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 ZNF22P17026 224 aaPredicted RBP10.1□□□□□ -0.79
HMGA1-203ENST00000374116 FAM104AQ969W3 186 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 HUWE1Q7Z6Z7 4374 aaKnown RBP10.1□□□□□ -0.79
HMGA1-203ENST00000374116 TRGV1A0A0A0MS02 117 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 A0A0J9YXV3 536 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 COX6CP09669 75 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 LINC00526Q96FQ7 95 aa10.1□□□□□ -0.79
HMGA1-203ENST00000374116 MRPS36P82909 103 aaKnown RBP10.09□□□□□ -0.79
HMGA1-203ENST00000374116 SDIM1Q6ZPB5 146 aa10.09□□□□□ -0.79
HMGA1-203ENST00000374116 LITAFQ99732 161 aa10.09□□□□□ -0.79
HMGA1-203ENST00000374116 UBE2D4Q9Y2X8 147 aa10.09□□□□□ -0.79
HMGA1-203ENST00000374116 A0A0J9YXY3 114 aa10.08□□□□□ -0.8
HMGA1-203ENST00000374116 RPS28P62857 69 aaKnown RBP10.08□□□□□ -0.8
HMGA1-203ENST00000374116 J3KT08 172 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 TRBV10-1A0A0K0K1A3 114 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 FAM236AA0A1B0GUQ0 79 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 FAM236BA0A1B0GV22 79 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 H7C2G1 150 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 CXCL5P42830 114 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 DAZ2Q13117 558 aaKnown RBP10.07□□□□□ -0.8
HMGA1-203ENST00000374116 CEMP1Q6PRD7 247 aaPredicted RBP10.07□□□□□ -0.8
HMGA1-203ENST00000374116 C16orf74Q96GX8 76 aa10.07□□□□□ -0.8
HMGA1-203ENST00000374116 IGHV3-38A0A0C4DH36 116 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 PLAC8L1A1L4L8 177 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 C9orf153Q5TBE3 101 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 LINC00643Q86TS7 51 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 TIMM21Q9BVV7 248 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 X6R8D5 127 aa10.06□□□□□ -0.8
HMGA1-203ENST00000374116 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.05□□□□□ -0.8
HMGA1-203ENST00000374116 TINCRA0A1B0GVN0 87 aa10.05□□□□□ -0.8
HMGA1-203ENST00000374116 IGKV2-29A2NJV5 120 aaPredicted RBP10.05□□□□□ -0.8
HMGA1-203ENST00000374116 Q6ZTI0 123 aa10.05□□□□□ -0.8
HMGA1-203ENST00000374116 STAB2Q8WWQ8 2551 aa10.05□□□□□ -0.8
HMGA1-203ENST00000374116 K7EQD1 137 aa10.05□□□□□ -0.8
HMGA1-203ENST00000374116 LINC00694P0DN24 101 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms