RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 XKRY2A2RUG3 117 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 F2Z2F3 143 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 CTRLP40313 264 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 XCL1P47992 114 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 Q6ZVQ6 151 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 GATD1Q8NB37 220 aa3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 RPL39LQ96EH5 51 aaKnown RBP3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 ALKBH7Q9BT30 221 aaPredicted RBP3.19□□□□□ -1.9
RNU4-4P-201ENST00000364588 HMSDA8MTL9 139 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 CCL25O15444 150 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 APCSP02743 223 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 FGF6P10767 208 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 FOXA3P55318 350 aaPredicted RBP3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 KRTAP10-8P60410 259 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 RGS21Q2M5E4 152 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 REG3GQ6UW15 175 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 SPINK6Q6UWN8 80 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 C9orf62Q8N4C0 152 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 CARD19Q96LW7 228 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 RNASE7Q9H1E1 156 aaKnown RBP3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 BATF3Q9NR55 127 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 MED9Q9NWA0 146 aa3.18□□□□□ -1.9
RNU4-4P-201ENST00000364588 TRAV1-1A0A0B4J248 108 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 IGHV1-58A0A0C4DH39 117 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 LINC00959A0A1B0GUT2 108 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 FAM231BA6NCW3 169 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 SDHAF1A6NFY7 115 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 PDE6DO43924 150 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 NCR2O95944 276 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 EIF5AP63241 154 aaKnown RBP3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 MEF2BQ02080 365 aaPredicted RBP3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 LBHQ53QV2 105 aaPredicted RBP3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 OR5A1Q8NGJ0 315 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 SMIM12Q96EX1 92 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 BTF3L4Q96K17 158 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 RPP21Q9H633 154 aaKnown RBP3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 BIN3Q9NQY0 253 aa3.17□□□□□ -1.9
RNU4-4P-201ENST00000364588 TEX46H3BTG2 121 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 K7EN84 100 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 BCL2P10415 239 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 ZNF25P17030 456 aaPredicted RBP3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 PMCHP20382 165 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 SYCNQ0VAF6 134 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 SMIM15Q7Z3B0 74 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 OCC1Q8TAD7 63 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 TMEM101Q96IK0 257 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 CNFNQ9BYD5 112 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 TMEM242Q9NWH2 141 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 LINC00474Q9P2X8 69 aa3.16□□□□□ -1.9
RNU4-4P-201ENST00000364588 IGLV4-69A0A075B6H9 119 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 A0A1W2PNN7 141 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 I3L3M4 83 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 ESDP10768 282 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 SS18Q15532 418 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 EIF5AL1Q6IS14 154 aaKnown RBP3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 MRAP2Q96G30 205 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 ST20Q9HBF5 79 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 PKIGQ9Y2B9 76 aa3.15□□□□□ -1.91
RNU4-4P-201ENST00000364588 TRBV6-5A0A0K0K1A5 114 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 LOC107984640A0A0U1RRK4 108 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 GATCO43716 136 aaKnown RBP3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 MT-ND6P03923 174 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 RPL18AQ02543 176 aaKnown RBP3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 Q1RN00 199 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 C9orf116Q5BN46 136 aaPredicted RBP3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 RNASE13Q5GAN3 156 aaKnown RBP3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 TEX261Q6UWH6 196 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 CD164L2Q6UWJ8 174 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 PHF5AQ7RTV0 110 aaKnown RBP3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 ZNF664Q8N3J9 261 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 CAMK2N2Q96S95 79 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 CDC42SE2Q9NRR3 84 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 PSORS1C2Q9UIG4 136 aa3.14□□□□□ -1.91
RNU4-4P-201ENST00000364588 LPAP08519 4548 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 TRAV13-1A0A0B4J241 112 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 C7orf77A4D0Y5 90 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 A8MWL6 223 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 SMKR1H3BMG3 65 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 COX7A2LO14548 114 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 APOMO95445 188 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 CEBPGP53567 150 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 KRTAP13-3Q3SY46 172 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 C1orf137Q5JT78 98 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 C5orf38Q86SI9 138 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 MRPL52Q86TS9 123 aaKnown RBP3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 AMN1Q8IY45 258 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 NUP35Q8NFH5 326 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 ISOC2Q96AB3 205 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 BORCS7Q96B45 105 aa3.13□□□□□ -1.91
RNU4-4P-201ENST00000364588 TRBV27A0A0K0K1C4 114 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 A0A1B0GUT8 65 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 HIGD1CA8MV81 97 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 C1orf196B1AJZ1 125 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 RAB4AP20338 218 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 FCER1GP30273 86 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 TAGLN2P37802 199 aaKnown RBP3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 POLR2KP53803 58 aaKnown RBP3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 SPAG11BQ08648 103 aa3.12□□□□□ -1.91
RNU4-4P-201ENST00000364588 Q6ZUT4 128 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms