RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 DOPEY1Q5JWR5 2465 aa11.25□□□□□ -0.61
RTN3-205ENST00000356000 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.24□□□□□ -0.61
RTN3-205ENST00000356000 SMIM1B2RUZ4 78 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 GRNP28799 593 aaKnown RBP11.24□□□□□ -0.61
RTN3-205ENST00000356000 MINOS1Q5TGZ0 78 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 PRR15Q8IV56 129 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 ROS1P08922 2347 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 JMJD7-PLA2G4BH0Y9G9 81 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 ADORA2A-AS1P86434 159 aa11.24□□□□□ -0.61
RTN3-205ENST00000356000 IBA57-AS1B1ANH7 110 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 SLPIP03973 132 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 FAM229BQ4G0N7 80 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 A0A1W2PRX2 142 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 BSPH1Q075Z2 132 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 MPLKIPQ8TAP9 179 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 SPENQ96T58 3664 aaKnown RBP11.23□□□□□ -0.61
RTN3-205ENST00000356000 FAM215AQ9Y5M1 114 aa11.23□□□□□ -0.61
RTN3-205ENST00000356000 TRAV10A0A0B4J240 114 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 SNRPD3P62318 126 aaKnown RBP11.22□□□□□ -0.61
RTN3-205ENST00000356000 C11orf72Q8NBR9 251 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 LINC00467Q9BRT7 94 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 Q6ZRU5 148 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 NAV2Q8IVL1 2488 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 G3V318 75 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 RPL36AP83881 106 aaKnown RBP11.22□□□□□ -0.61
RTN3-205ENST00000356000 LINC00242Q5T6M2 205 aa11.22□□□□□ -0.61
RTN3-205ENST00000356000 RPL36ALQ969Q0 106 aaKnown RBP11.22□□□□□ -0.61
RTN3-205ENST00000356000 SND1-IT1Q9HBX3 110 aa11.21□□□□□ -0.61
RTN3-205ENST00000356000 PLAC8L1A1L4L8 177 aa11.21□□□□□ -0.62
RTN3-205ENST00000356000 CSMD1Q96PZ7 3565 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 IGHV3OR16-12A0A075B7B8 117 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 LRRK2Q5S007 2527 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 LYNX1G3V0Z9 82 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 LYNX1P0DP58 116 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 FAM19A3Q7Z5A8 133 aa11.2□□□□□ -0.62
RTN3-205ENST00000356000 PKDREJQ9NTG1 2253 aa11.19□□□□□ -0.62
RTN3-205ENST00000356000 UNC79Q9P2D8 2635 aa11.19□□□□□ -0.62
RTN3-205ENST00000356000 LINC00167Q96N53 147 aa11.19□□□□□ -0.62
RTN3-205ENST00000356000 MIFP14174 115 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 MOB4Q9Y3A3 225 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 IGKV3-7A0A075B6H7 116 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 IGHV1OR15-1A0A075B7D0 117 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 TRBV7-4A0A0J9YYF1 115 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 PROK1P58294 105 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 LAMTOR3Q9UHA4 124 aa11.18□□□□□ -0.62
RTN3-205ENST00000356000 USP9XQ93008 2570 aaPredicted RBP11.17□□□□□ -0.62
RTN3-205ENST00000356000 NDUFA4O00483 81 aa11.17□□□□□ -0.62
RTN3-205ENST00000356000 IGHV3-38A0A0C4DH36 116 aa11.16□□□□□ -0.62
RTN3-205ENST00000356000 SAA4P35542 130 aa11.16□□□□□ -0.62
RTN3-205ENST00000356000 CD164Q04900 197 aa11.16□□□□□ -0.62
RTN3-205ENST00000356000 IGHV3-73A0A0B4J1V6 119 aa11.16□□□□□ -0.62
RTN3-205ENST00000356000 FLNCQ14315 2725 aa11.15□□□□□ -0.62
RTN3-205ENST00000356000 Q9UF83 564 aa11.15□□□□□ -0.62
RTN3-205ENST00000356000 DGAT2L7PQ6IED9 249 aa11.15□□□□□ -0.62
RTN3-205ENST00000356000 HIVEP3Q5T1R4 2406 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 MED13LQ71F56 2210 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 ESRGQ1W209 222 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 TACC2O95359 2948 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.14□□□□□ -0.63
RTN3-205ENST00000356000 LINC01547P58512 204 aaPredicted RBP11.14□□□□□ -0.63
RTN3-205ENST00000356000 FBXL19-AS1Q494R0 122 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 MINOS1-NBL1R4GNA1 71 aa11.14□□□□□ -0.63
RTN3-205ENST00000356000 E7EQL1 145 aa11.13□□□□□ -0.63
RTN3-205ENST00000356000 C19orf54Q5BKX5 351 aa11.13□□□□□ -0.63
RTN3-205ENST00000356000 TMEM256-PLSCR3K7ERE1 68 aa11.13□□□□□ -0.63
RTN3-205ENST00000356000 Q6ZTI0 123 aa11.13□□□□□ -0.63
RTN3-205ENST00000356000 RETNQ9HD89 108 aa11.13□□□□□ -0.63
RTN3-205ENST00000356000 TM2D3Q9BRN9 247 aa11.12□□□□□ -0.63
RTN3-205ENST00000356000 Q96MF0 132 aa11.12□□□□□ -0.63
RTN3-205ENST00000356000 CCL18P55774 89 aa11.11□□□□□ -0.63
RTN3-205ENST00000356000 RHPN1-AS1Q9BWJ2 59 aa11.11□□□□□ -0.63
RTN3-205ENST00000356000 RP1L1Q8IWN7 2480 aaPredicted RBP11.11□□□□□ -0.63
RTN3-205ENST00000356000 PAX4O43316 350 aa11.1□□□□□ -0.63
RTN3-205ENST00000356000 C19orf84I3L1E1 186 aa11.09□□□□□ -0.63
RTN3-205ENST00000356000 LY6G6DO95868 133 aa11.09□□□□□ -0.63
RTN3-205ENST00000356000 Q6ZSN1 163 aa11.09□□□□□ -0.63
RTN3-205ENST00000356000 MYO9AB2RTY4 2548 aa11.09□□□□□ -0.63
RTN3-205ENST00000356000 TMEM254Q8TBM7 123 aa11.09□□□□□ -0.63
RTN3-205ENST00000356000 ERC2-IT1O76042 136 aa11.08□□□□□ -0.64
RTN3-205ENST00000356000 SPTBN1Q01082 2364 aaKnown RBP11.08□□□□□ -0.64
RTN3-205ENST00000356000 CXCL6P80162 114 aa11.08□□□□□ -0.64
RTN3-205ENST00000356000 Q8N3U1 123 aa11.08□□□□□ -0.64
RTN3-205ENST00000356000 Q8N814 137 aa11.07□□□□□ -0.64
RTN3-205ENST00000356000 HAMPP81172 84 aa11.07□□□□□ -0.64
RTN3-205ENST00000356000 Q6ZQT0 140 aa11.07□□□□□ -0.64
RTN3-205ENST00000356000 Q6ZVQ6 151 aa11.06□□□□□ -0.64
RTN3-205ENST00000356000 IGKV3-20P01619 116 aa11.06□□□□□ -0.64
RTN3-205ENST00000356000 LINC00158P58513 81 aa11.06□□□□□ -0.64
RTN3-205ENST00000356000 SPTAN1Q13813 2472 aaKnown RBP11.06□□□□□ -0.64
RTN3-205ENST00000356000 SPINK13Q1W4C9 94 aa11.05□□□□□ -0.64
RTN3-205ENST00000356000 NREPQ16612 68 aa11.05□□□□□ -0.64
RTN3-205ENST00000356000 Q6ZTC4 211 aa11.05□□□□□ -0.64
RTN3-205ENST00000356000 TRBV6-4A0A1B0GX49 114 aa11.05□□□□□ -0.64
RTN3-205ENST00000356000 K7EQG2 157 aa11.05□□□□□ -0.64
RTN3-205ENST00000356000 PCNX1Q96RV3 2341 aa11.04□□□□□ -0.64
RTN3-205ENST00000356000 LOC110117498A0A087WWA1 95 aa11.04□□□□□ -0.64
RTN3-205ENST00000356000 COX7B2Q8TF08 81 aa11.04□□□□□ -0.64
RTN3-205ENST00000356000 TEX15Q9BXT5 2789 aa11.03□□□□□ -0.64
RTN3-205ENST00000356000 A0A087WZ39 114 aa11.03□□□□□ -0.64
RTN3-205ENST00000356000 DYNLRB2Q8TF09 96 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 190.4 ms