RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 CHCHD7Q9BUK0 85 aa11.43□□□□□ -0.58
USH1C-202ENST00000318024 TRGV11A0A075B6L2 103 aa11.42□□□□□ -0.58
USH1C-202ENST00000318024 A8MZ25 164 aa11.42□□□□□ -0.58
USH1C-202ENST00000318024 TIMM17BO60830 172 aa11.42□□□□□ -0.58
USH1C-202ENST00000318024 CLEC2BQ92478 149 aa11.42□□□□□ -0.58
USH1C-202ENST00000318024 PRM2P04554 102 aa11.41□□□□□ -0.58
USH1C-202ENST00000318024 Q9UF83 564 aa11.41□□□□□ -0.58
USH1C-202ENST00000318024 UBE2D4Q9Y2X8 147 aa11.41□□□□□ -0.58
USH1C-202ENST00000318024 RNASE13Q5GAN3 156 aaKnown RBP11.41□□□□□ -0.58
USH1C-202ENST00000318024 PRIMA1Q86XR5 153 aa11.4□□□□□ -0.58
USH1C-202ENST00000318024 COX6CP09669 75 aa11.4□□□□□ -0.58
USH1C-202ENST00000318024 C5orf47Q569G3 176 aa11.4□□□□□ -0.58
USH1C-202ENST00000318024 STHQ8IWL8 128 aa11.4□□□□□ -0.58
USH1C-202ENST00000318024 SPANXA1Q9NS26 97 aa11.39□□□□□ -0.59
USH1C-202ENST00000318024 Q6ZSN1 163 aa11.39□□□□□ -0.59
USH1C-202ENST00000318024 IGLV5-45A0A087WSX0 123 aa11.38□□□□□ -0.59
USH1C-202ENST00000318024 IGHV3-73A0A0B4J1V6 119 aa11.38□□□□□ -0.59
USH1C-202ENST00000318024 TRBV7-7A0A0K0K1E9 115 aa11.38□□□□□ -0.59
USH1C-202ENST00000318024 A8MTW9 85 aa11.38□□□□□ -0.59
USH1C-202ENST00000318024 XCL2Q9UBD3 114 aa11.38□□□□□ -0.59
USH1C-202ENST00000318024 NPC2P61916 151 aa11.37□□□□□ -0.59
USH1C-202ENST00000318024 BEAN1Q3B7T3 259 aa11.37□□□□□ -0.59
USH1C-202ENST00000318024 PIK3CD-AS1Q5SR53 167 aa11.36□□□□□ -0.59
USH1C-202ENST00000318024 C19orf73Q9NVV2 129 aa11.36□□□□□ -0.59
USH1C-202ENST00000318024 STAB1Q9NY15 2570 aa11.36□□□□□ -0.59
USH1C-202ENST00000318024 NDUFA1O15239 70 aa11.36□□□□□ -0.59
USH1C-202ENST00000318024 WIPF1O43516 503 aa11.36□□□□□ -0.59
USH1C-202ENST00000318024 TIRAPP58753 221 aa11.35□□□□□ -0.59
USH1C-202ENST00000318024 LINC00467Q9BRT7 94 aa11.35□□□□□ -0.59
USH1C-202ENST00000318024 IGHV3OR16-12A0A075B7B8 117 aa11.35□□□□□ -0.59
USH1C-202ENST00000318024 RPL35AP18077 110 aaKnown RBP11.35□□□□□ -0.59
USH1C-202ENST00000318024 CDKN2A-AS1Q9UH64 79 aa11.35□□□□□ -0.59
USH1C-202ENST00000318024 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.34□□□□□ -0.59
USH1C-202ENST00000318024 IGKV2-29A2NJV5 120 aaPredicted RBP11.34□□□□□ -0.59
USH1C-202ENST00000318024 TMEM101Q96IK0 257 aa11.34□□□□□ -0.59
USH1C-202ENST00000318024 DAND5Q8N907 189 aa11.33□□□□□ -0.59
USH1C-202ENST00000318024 LINC01587Q99440 93 aa11.33□□□□□ -0.59
USH1C-202ENST00000318024 IGLV5-39A0A0G2JS06 123 aa11.33□□□□□ -0.6
USH1C-202ENST00000318024 C9orf66Q5T8R8 295 aa11.33□□□□□ -0.6
USH1C-202ENST00000318024 C3orf56Q8N813 242 aa11.32□□□□□ -0.6
USH1C-202ENST00000318024 LINC00308Q8TCZ7 52 aa11.32□□□□□ -0.6
USH1C-202ENST00000318024 INSP01308 110 aa11.31□□□□□ -0.6
USH1C-202ENST00000318024 COX6A2Q02221 97 aa11.31□□□□□ -0.6
USH1C-202ENST00000318024 SDIM1Q6ZPB5 146 aa11.31□□□□□ -0.6
USH1C-202ENST00000318024 COL6A5A8TX70 2615 aa11.31□□□□□ -0.6
USH1C-202ENST00000318024 IGHV3-53P01767 116 aa11.31□□□□□ -0.6
USH1C-202ENST00000318024 CMC4P56277 68 aaPredicted RBP11.31□□□□□ -0.6
USH1C-202ENST00000318024 COX7A2LO14548 114 aa11.3□□□□□ -0.6
USH1C-202ENST00000318024 SOSTDC1Q6X4U4 206 aa11.3□□□□□ -0.6
USH1C-202ENST00000318024 DNAJC30Q96LL9 226 aa11.3□□□□□ -0.6
USH1C-202ENST00000318024 GIG44P09565 113 aaPredicted RBP11.29□□□□□ -0.6
USH1C-202ENST00000318024 FAM19A3Q7Z5A8 133 aa11.29□□□□□ -0.6
USH1C-202ENST00000318024 C1orf158Q8N1D5 194 aa11.29□□□□□ -0.6
USH1C-202ENST00000318024 C22orf24Q9Y442 160 aa11.29□□□□□ -0.6
USH1C-202ENST00000318024 C11orf72Q8NBR9 251 aa11.29□□□□□ -0.6
USH1C-202ENST00000318024 IMUPQ9GZP8 106 aa11.29□□□□□ -0.6
USH1C-202ENST00000318024 ACYP1P07311 99 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 SMCR5Q8TEV8 140 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 CHCHD5Q9BSY4 110 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 MEIG1Q5JSS6 88 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 WFDC9Q8NEX5 89 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 PKD1L1Q8TDX9 2849 aa11.28□□□□□ -0.6
USH1C-202ENST00000318024 IGHV3-38A0A0C4DH36 116 aa11.27□□□□□ -0.61
USH1C-202ENST00000318024 CMYA5Q8N3K9 4069 aa11.27□□□□□ -0.61
USH1C-202ENST00000318024 ZNF415Q09FC8 603 aa11.27□□□□□ -0.61
USH1C-202ENST00000318024 LINC00242Q5T6M2 205 aa11.27□□□□□ -0.61
USH1C-202ENST00000318024 Q9H8V8 135 aa11.27□□□□□ -0.61
USH1C-202ENST00000318024 RS1O15537 224 aa11.25□□□□□ -0.61
USH1C-202ENST00000318024 CIRBPQ14011 172 aaKnown RBP11.25□□□□□ -0.61
USH1C-202ENST00000318024 NBEAL2Q6ZNJ1 2754 aa11.25□□□□□ -0.61
USH1C-202ENST00000318024 OXLD1Q5BKU9 147 aa11.25□□□□□ -0.61
USH1C-202ENST00000318024 ZNF625Q96I27 306 aaPredicted RBP11.25□□□□□ -0.61
USH1C-202ENST00000318024 SMIM1B2RUZ4 78 aa11.24□□□□□ -0.61
USH1C-202ENST00000318024 TRACP01848 142 aa11.24□□□□□ -0.61
USH1C-202ENST00000318024 PPDPFQ9H3Y8 114 aa11.24□□□□□ -0.61
USH1C-202ENST00000318024 HERVK_113P63121 156 aa11.24□□□□□ -0.61
USH1C-202ENST00000318024 CSDC2Q9Y534 153 aaKnown RBP11.24□□□□□ -0.61
USH1C-202ENST00000318024 LINC00643Q86TS7 51 aa11.23□□□□□ -0.61
USH1C-202ENST00000318024 DAZ2Q13117 558 aaKnown RBP11.22□□□□□ -0.61
USH1C-202ENST00000318024 DAZ4Q86SG3 579 aaKnown RBP11.22□□□□□ -0.61
USH1C-202ENST00000318024 DAZ3Q9NR90 486 aaKnown RBP11.22□□□□□ -0.61
USH1C-202ENST00000318024 FAM236AA0A1B0GUQ0 79 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 FAM236BA0A1B0GV22 79 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 F5H768 121 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 LINC00694P0DN24 101 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 CSNK1G2-AS1Q8NCQ2 148 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 FAM218AQ96MZ4 157 aa11.21□□□□□ -0.61
USH1C-202ENST00000318024 FAM222AQ5U5X8 452 aa11.21□□□□□ -0.62
USH1C-202ENST00000318024 TMEM126AQ9H061 195 aa11.21□□□□□ -0.62
USH1C-202ENST00000318024 ANK2Q01484 3957 aa11.21□□□□□ -0.62
USH1C-202ENST00000318024 C5orf38Q86SI9 138 aa11.19□□□□□ -0.62
USH1C-202ENST00000318024 COPS9Q8WXC6 57 aa11.19□□□□□ -0.62
USH1C-202ENST00000318024 A0A0U1RRA0 63 aa11.19□□□□□ -0.62
USH1C-202ENST00000318024 BAALC-AS2P0C853 105 aa11.19□□□□□ -0.62
USH1C-202ENST00000318024 DGAT2L7PQ6IED9 249 aa11.18□□□□□ -0.62
USH1C-202ENST00000318024 NTM-AS1Q6ZSK4 140 aa11.18□□□□□ -0.62
USH1C-202ENST00000318024 IL17DQ8TAD2 202 aa11.18□□□□□ -0.62
USH1C-202ENST00000318024 TRGV1A0A0A0MS02 117 aa11.17□□□□□ -0.62
USH1C-202ENST00000318024 NOP10Q9NPE3 64 aaKnown RBP11.17□□□□□ -0.62
USH1C-202ENST00000318024 KRTAP10-11P60412 298 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms