RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SVBPQ8N300 66 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 DPH3Q96FX2 82 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 CARD19Q96LW7 228 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 RPS10P5Q9NQ39 176 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 FAT3Q8TDW7 4589 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 A0A096LNI7 61 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 SNAPINO95295 136 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 APOC3P02656 99 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 MALP21145 153 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 MAP1LC3AQ9H492 121 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 SPANXA1Q9NS26 97 aa10.33□□□□□ -0.76
LSM1-201ENST00000311351 LOC389332A0A1B0GUA5 103 aa10.32□□□□□ -0.76
LSM1-201ENST00000311351 ZNF561-AS1K7EIQ3 104 aa10.32□□□□□ -0.76
LSM1-201ENST00000311351 MAJINQ3KP22 176 aa10.32□□□□□ -0.76
LSM1-201ENST00000311351 C5orf38Q86SI9 138 aa10.32□□□□□ -0.76
LSM1-201ENST00000311351 PLAC8Q9NZF1 115 aa10.32□□□□□ -0.76
LSM1-201ENST00000311351 IGLV4-69A0A075B6H9 119 aa10.31□□□□□ -0.76
LSM1-201ENST00000311351 PRSS47A8MTI9 375 aa10.31□□□□□ -0.76
LSM1-201ENST00000311351 KRTAP29-1A8MX34 341 aaPredicted RBP10.31□□□□□ -0.76
LSM1-201ENST00000311351 SYCNQ0VAF6 134 aa10.31□□□□□ -0.76
LSM1-201ENST00000311351 GNB1LQ9BYB4 327 aa10.31□□□□□ -0.76
LSM1-201ENST00000311351 IFITM10A6NMD0 228 aa10.3□□□□□ -0.76
LSM1-201ENST00000311351 K7EMI3 77 aa10.3□□□□□ -0.76
LSM1-201ENST00000311351 MT-ND6P03923 174 aa10.3□□□□□ -0.76
LSM1-201ENST00000311351 MRPS36P82909 103 aaKnown RBP10.3□□□□□ -0.76
LSM1-201ENST00000311351 Q6ZRU5 148 aa10.29□□□□□ -0.76
LSM1-201ENST00000311351 IFI27P40305 119 aaPredicted RBP10.28□□□□□ -0.76
LSM1-201ENST00000311351 STPG4Q8N801 248 aa10.28□□□□□ -0.76
LSM1-201ENST00000311351 Q8N8P6 123 aa10.28□□□□□ -0.76
LSM1-201ENST00000311351 NXT2Q9NPJ8 142 aaKnown RBP10.28□□□□□ -0.76
LSM1-201ENST00000311351 IGLV4-3A0A075B6K6 122 aa10.27□□□□□ -0.77
LSM1-201ENST00000311351 SPAG11BQ08648 103 aa10.27□□□□□ -0.77
LSM1-201ENST00000311351 CAMK2N2Q96S95 79 aa10.27□□□□□ -0.77
LSM1-201ENST00000311351 IGHV3OR16-9A0A0B4J2B5 98 aa10.26□□□□□ -0.77
LSM1-201ENST00000311351 G0S2P27469 103 aa10.26□□□□□ -0.77
LSM1-201ENST00000311351 ORMDL2Q53FV1 153 aa10.26□□□□□ -0.77
LSM1-201ENST00000311351 APOMO95445 188 aa10.25□□□□□ -0.77
LSM1-201ENST00000311351 ORAOV1Q8WV07 137 aa10.25□□□□□ -0.77
LSM1-201ENST00000311351 PKIGQ9Y2B9 76 aa10.25□□□□□ -0.77
LSM1-201ENST00000311351 PYGO1Q9Y3Y4 419 aa10.25□□□□□ -0.77
LSM1-201ENST00000311351 KIAA1644Q3SXP7 199 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 C2orf66Q6UXQ4 117 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 OR10D4PQ8NGN7 298 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 C7orf33Q8WU49 177 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 TMEM141Q96I45 108 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 C2orf48Q96LS8 159 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 CYSLTR1Q9Y271 337 aa10.24□□□□□ -0.77
LSM1-201ENST00000311351 A0A0J9YXV3 536 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 LOC107984640A0A0U1RRK4 108 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 PTTG1IPP53801 180 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 GAGE2BQ13066 116 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 ZC2HC1BQ5TFG8 222 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 LINC00474Q9P2X8 69 aa10.23□□□□□ -0.77
LSM1-201ENST00000311351 OXTP01178 125 aa10.22□□□□□ -0.77
LSM1-201ENST00000311351 FABP9Q0Z7S8 132 aa10.22□□□□□ -0.77
LSM1-201ENST00000311351 LINC00242Q5T6M2 205 aa10.22□□□□□ -0.77
LSM1-201ENST00000311351 MRPL18Q9H0U6 180 aaKnown RBP10.22□□□□□ -0.77
LSM1-201ENST00000311351 TGIF2-C20orf24A0A0A6YYL0 155 aa10.21□□□□□ -0.77
LSM1-201ENST00000311351 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.21□□□□□ -0.77
LSM1-201ENST00000311351 NPSP0C0P6 89 aa10.21□□□□□ -0.77
LSM1-201ENST00000311351 TEX43Q6ZNM6 134 aa10.21□□□□□ -0.77
LSM1-201ENST00000311351 LINC00173Q6ZV60 143 aa10.21□□□□□ -0.77
LSM1-201ENST00000311351 LINC01549A6NIU2 74 aa10.2□□□□□ -0.78
LSM1-201ENST00000311351 UBE2D1P51668 147 aa10.2□□□□□ -0.78
LSM1-201ENST00000311351 PRR3P79522 188 aaKnown RBP10.2□□□□□ -0.78
LSM1-201ENST00000311351 RPL18AQ02543 176 aaKnown RBP10.2□□□□□ -0.78
LSM1-201ENST00000311351 ALKBH7Q9BT30 221 aaPredicted RBP10.2□□□□□ -0.78
LSM1-201ENST00000311351 TRAPPC1Q9Y5R8 145 aa10.2□□□□□ -0.78
LSM1-201ENST00000311351 PAPPA-AS1Q5QFB9 102 aa10.19□□□□□ -0.78
LSM1-201ENST00000311351 C10orf25Q5T742 122 aa10.19□□□□□ -0.78
LSM1-201ENST00000311351 Q6ZN92 141 aa10.19□□□□□ -0.78
LSM1-201ENST00000311351 A0A087WZ39 114 aa10.18□□□□□ -0.78
LSM1-201ENST00000311351 IGIPA6NJ69 53 aa10.18□□□□□ -0.78
LSM1-201ENST00000311351 AMELXQ99217 191 aa10.18□□□□□ -0.78
LSM1-201ENST00000311351 C2orf88Q9BSF0 95 aa10.18□□□□□ -0.78
LSM1-201ENST00000311351 MRPL35Q9NZE8 188 aaKnown RBP10.18□□□□□ -0.78
LSM1-201ENST00000311351 A0A1W2PNN7 141 aa10.17□□□□□ -0.78
LSM1-201ENST00000311351 NDUFA1O15239 70 aa10.17□□□□□ -0.78
LSM1-201ENST00000311351 RNF151Q2KHN1 245 aa10.17□□□□□ -0.78
LSM1-201ENST00000311351 UNQ6190/PRO20217Q6UXQ8 127 aa10.17□□□□□ -0.78
LSM1-201ENST00000311351 SMCO4Q9NRQ5 59 aa10.17□□□□□ -0.78
LSM1-201ENST00000311351 KIAA0087Q14695 138 aa10.16□□□□□ -0.78
LSM1-201ENST00000311351 FA2HQ7L5A8 372 aa10.16□□□□□ -0.78
LSM1-201ENST00000311351 SLC7A5P1Q8MH63 180 aa10.16□□□□□ -0.78
LSM1-201ENST00000311351 VCX2Q9H322 139 aa10.16□□□□□ -0.78
LSM1-201ENST00000311351 C6orf48Q9UBA6 75 aa10.16□□□□□ -0.78
LSM1-201ENST00000311351 LINC01546A6NGU7 62 aa10.15□□□□□ -0.78
LSM1-201ENST00000311351 C9orf116Q5BN46 136 aaPredicted RBP10.15□□□□□ -0.78
LSM1-201ENST00000311351 TOMM6Q96B49 74 aa10.15□□□□□ -0.78
LSM1-201ENST00000311351 HMCN2Q8NDA2 5059 aa10.14□□□□□ -0.79
LSM1-201ENST00000311351 F8WDY8 70 aa10.14□□□□□ -0.79
LSM1-201ENST00000311351 TIMM17AQ99595 171 aa10.14□□□□□ -0.79
LSM1-201ENST00000311351 C2orf82Q6UX34 121 aa10.13□□□□□ -0.79
LSM1-201ENST00000311351 MT1HL1P0DM35 61 aa10.12□□□□□ -0.79
LSM1-201ENST00000311351 RAB5BP61020 215 aa10.12□□□□□ -0.79
LSM1-201ENST00000311351 Q6ZRP5 223 aa10.12□□□□□ -0.79
LSM1-201ENST00000311351 ERASQ7Z444 233 aa10.12□□□□□ -0.79
LSM1-201ENST00000311351 SCGB3A1Q96QR1 104 aa10.12□□□□□ -0.79
LSM1-201ENST00000311351 SEC11AP67812 179 aa10.11□□□□□ -0.79
LSM1-201ENST00000311351 FAM19A3Q7Z5A8 133 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 188.1 ms