RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 COL5A1-AS1Q5SY13 56 aa11.33□□□□□ -0.6
USP4-201ENST00000265560 LYPD5Q6UWN5 251 aa11.33□□□□□ -0.6
USP4-201ENST00000265560 NPSP0C0P6 89 aa11.33□□□□□ -0.6
USP4-201ENST00000265560 TEX48A0A1B0GUV7 120 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 IGHV3-30P01768 117 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 IGHV3-33P01772 117 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 IGHV3-30-5P0DP03 117 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 IGHV1-58A0A0C4DH39 117 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 A0A0U1RRA0 63 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 SIVA1O15304 175 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 HERVK_113P63121 156 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 RAB37Q96AX2 223 aa11.32□□□□□ -0.6
USP4-201ENST00000265560 H7C423 109 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 HSD52Q0P140 79 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 C10orf126Q8N4M7 172 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 K7ERJ3 54 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 TIRAPP58753 221 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 SRSF9Q13242 221 aaKnown RBP eCLIP11.31□□□□□ -0.6
USP4-201ENST00000265560 WFDC10BQ8IUB3 73 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 TOMM7Q9P0U1 55 aa11.31□□□□□ -0.6
USP4-201ENST00000265560 LINC00959A0A1B0GUT2 108 aa11.3□□□□□ -0.6
USP4-201ENST00000265560 PTTG1IPP53801 180 aa11.3□□□□□ -0.6
USP4-201ENST00000265560 SMAGPQ0VAQ4 97 aa11.3□□□□□ -0.6
USP4-201ENST00000265560 ORAOV1Q8WV07 137 aa11.3□□□□□ -0.6
USP4-201ENST00000265560 CSMD3Q7Z407 3707 aa11.3□□□□□ -0.6
USP4-201ENST00000265560 CCL25O15444 150 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 ESRGQ1W209 222 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 NDUFA12Q9UI09 145 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 KLK12Q9UKR0 248 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 SMIM1B2RUZ4 78 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 NPC2P61916 151 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 HIGD1BQ9P298 99 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 H3BRM9 83 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 LBHQ53QV2 105 aaPredicted RBP11.29□□□□□ -0.6
USP4-201ENST00000265560 DAND5Q8N907 189 aa11.29□□□□□ -0.6
USP4-201ENST00000265560 LELP1Q5T871 98 aa11.28□□□□□ -0.6
USP4-201ENST00000265560 IGLV5-45A0A087WSX0 123 aa11.28□□□□□ -0.6
USP4-201ENST00000265560 NHP2Q9NX24 153 aaKnown RBP11.27□□□□□ -0.6
USP4-201ENST00000265560 A0A1B0GUV1 79 aa11.27□□□□□ -0.61
USP4-201ENST00000265560 CEND1Q8N111 149 aa11.27□□□□□ -0.61
USP4-201ENST00000265560 REG3AQ06141 175 aa11.26□□□□□ -0.61
USP4-201ENST00000265560 IGLL5B9A064 214 aa11.26□□□□□ -0.61
USP4-201ENST00000265560 A0A0J9YXY3 114 aa11.26□□□□□ -0.61
USP4-201ENST00000265560 Q9H8V8 135 aa11.26□□□□□ -0.61
USP4-201ENST00000265560 IGHV3OR16-9A0A0B4J2B5 98 aa11.25□□□□□ -0.61
USP4-201ENST00000265560 TAX1BP3O14907 124 aa11.25□□□□□ -0.61
USP4-201ENST00000265560 SEC11AP67812 179 aa11.25□□□□□ -0.61
USP4-201ENST00000265560 ADAMTSL4-AS1Q5T5F5 129 aa11.24□□□□□ -0.61
USP4-201ENST00000265560 PRSS2P07478 247 aa11.24□□□□□ -0.61
USP4-201ENST00000265560 SS18Q15532 418 aa11.23□□□□□ -0.61
USP4-201ENST00000265560 UBE2WQ96B02 151 aa11.23□□□□□ -0.61
USP4-201ENST00000265560 IGLV5-39A0A0G2JS06 123 aa11.22□□□□□ -0.61
USP4-201ENST00000265560 CHCHD10Q8WYQ3 142 aaPredicted RBP11.22□□□□□ -0.61
USP4-201ENST00000265560 FAM19A3Q7Z5A8 133 aa11.22□□□□□ -0.61
USP4-201ENST00000265560 EIF4EBP3O60516 100 aaPredicted RBP11.22□□□□□ -0.61
USP4-201ENST00000265560 ZFAND6Q6FIF0 208 aa11.22□□□□□ -0.61
USP4-201ENST00000265560 SH2D6Q7Z4S9 175 aa11.22□□□□□ -0.61
USP4-201ENST00000265560 LINC00526Q96FQ7 95 aa11.22□□□□□ -0.61
USP4-201ENST00000265560 TM2D2Q9BX73 214 aa11.21□□□□□ -0.61
USP4-201ENST00000265560 TRAV10A0A0B4J240 114 aa11.21□□□□□ -0.62
USP4-201ENST00000265560 APOMO95445 188 aa11.2□□□□□ -0.62
USP4-201ENST00000265560 A6NDN8 102 aa11.2□□□□□ -0.62
USP4-201ENST00000265560 SFTA2Q6UW10 78 aa11.2□□□□□ -0.62
USP4-201ENST00000265560 FBN3Q75N90 2809 aa11.2□□□□□ -0.62
USP4-201ENST00000265560 ENHOQ6UWT2 76 aa11.2□□□□□ -0.62
USP4-201ENST00000265560 H3BNG1 76 aa11.19□□□□□ -0.62
USP4-201ENST00000265560 MUSTN1Q8IVN3 82 aa11.19□□□□□ -0.62
USP4-201ENST00000265560 COX11Q9Y6N1 276 aa11.19□□□□□ -0.62
USP4-201ENST00000265560 C2orf82Q6UX34 121 aa11.19□□□□□ -0.62
USP4-201ENST00000265560 B9D2Q9BPU9 175 aa11.19□□□□□ -0.62
USP4-201ENST00000265560 DNAH7Q8WXX0 4024 aa11.18□□□□□ -0.62
USP4-201ENST00000265560 A0A087WZ39 114 aa11.18□□□□□ -0.62
USP4-201ENST00000265560 H3BUT2 72 aa11.18□□□□□ -0.62
USP4-201ENST00000265560 LITAFQ99732 161 aa11.18□□□□□ -0.62
USP4-201ENST00000265560 COX7B2Q8TF08 81 aa11.18□□□□□ -0.62
USP4-201ENST00000265560 SMIM13P0DJ93 91 aa11.17□□□□□ -0.62
USP4-201ENST00000265560 MEIG1Q5JSS6 88 aa11.17□□□□□ -0.62
USP4-201ENST00000265560 GAGE12HA6NDE8 117 aa11.16□□□□□ -0.62
USP4-201ENST00000265560 NDUFA1O15239 70 aa11.16□□□□□ -0.62
USP4-201ENST00000265560 TAL2Q16559 108 aa11.16□□□□□ -0.62
USP4-201ENST00000265560 A4D1N5 150 aa11.15□□□□□ -0.62
USP4-201ENST00000265560 VAMP3Q15836 100 aa11.15□□□□□ -0.62
USP4-201ENST00000265560 C6orf226Q5I0X4 101 aa11.15□□□□□ -0.62
USP4-201ENST00000265560 Q9HAA7 133 aa11.15□□□□□ -0.62
USP4-201ENST00000265560 LINC00588Q9Y4M8 146 aa11.15□□□□□ -0.62
USP4-201ENST00000265560 CRPP02741 224 aa11.15□□□□□ -0.63
USP4-201ENST00000265560 MALP21145 153 aa11.15□□□□□ -0.63
USP4-201ENST00000265560 TMEM238C9JI98 176 aa11.14□□□□□ -0.63
USP4-201ENST00000265560 CD164L2Q6UWJ8 174 aa11.14□□□□□ -0.63
USP4-201ENST00000265560 COX7A2LO14548 114 aa11.14□□□□□ -0.63
USP4-201ENST00000265560 PFN2P35080 140 aa11.14□□□□□ -0.63
USP4-201ENST00000265560 H7C2G1 150 aa11.13□□□□□ -0.63
USP4-201ENST00000265560 FOXI1Q12951 378 aa11.13□□□□□ -0.63
USP4-201ENST00000265560 C6orf223Q8N319 242 aa11.13□□□□□ -0.63
USP4-201ENST00000265560 SPANXB1Q9NS25 103 aaPredicted RBP11.13□□□□□ -0.63
USP4-201ENST00000265560 PLECQ15149 4684 aaKnown RBP11.13□□□□□ -0.63
USP4-201ENST00000265560 PRR34Q9NV39 138 aa11.12□□□□□ -0.63
USP4-201ENST00000265560 CFC1BP0CG36 223 aa11.11□□□□□ -0.63
USP4-201ENST00000265560 CFC1P0CG37 223 aa11.11□□□□□ -0.63
USP4-201ENST00000265560 C9orf116Q5BN46 136 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms