RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 MAJINQ3KP22 176 aa13.31□□□□□ -0.28
NEDD8-201ENST00000250495 ALKBH7Q9BT30 221 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-201ENST00000250495 HMCN2Q8NDA2 5059 aa13.31□□□□□ -0.28
NEDD8-201ENST00000250495 SERF1AO75920 110 aa13.3□□□□□ -0.28
NEDD8-201ENST00000250495 KIAA1644Q3SXP7 199 aa13.3□□□□□ -0.28
NEDD8-201ENST00000250495 PYY3Q5JQD4 70 aa13.3□□□□□ -0.28
NEDD8-201ENST00000250495 C18orf32Q8TCD1 76 aa13.3□□□□□ -0.28
NEDD8-201ENST00000250495 TMEM191AQ9H0A3 160 aa13.3□□□□□ -0.28
NEDD8-201ENST00000250495 IGKV2-24A0A0C4DH68 120 aa13.29□□□□□ -0.28
NEDD8-201ENST00000250495 XCL1P47992 114 aa13.29□□□□□ -0.28
NEDD8-201ENST00000250495 MRAP2Q96G30 205 aa13.29□□□□□ -0.28
NEDD8-201ENST00000250495 LINC00959A0A1B0GUT2 108 aa13.28□□□□□ -0.28
NEDD8-201ENST00000250495 TSHBP01222 138 aa13.28□□□□□ -0.28
NEDD8-201ENST00000250495 MT1HL1P0DM35 61 aa13.28□□□□□ -0.28
NEDD8-201ENST00000250495 S100A12P80511 92 aa13.28□□□□□ -0.28
NEDD8-201ENST00000250495 JOSD1Q15040 202 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-201ENST00000250495 PKIGQ9Y2B9 76 aa13.28□□□□□ -0.28
NEDD8-201ENST00000250495 IGHV1-58A0A0C4DH39 117 aa13.27□□□□□ -0.29
NEDD8-201ENST00000250495 CCL25O15444 150 aa13.27□□□□□ -0.29
NEDD8-201ENST00000250495 GAS8-AS1O95177 125 aa13.27□□□□□ -0.29
NEDD8-201ENST00000250495 POLR2KP53803 58 aaKnown RBP13.27□□□□□ -0.29
NEDD8-201ENST00000250495 SS18Q15532 418 aa13.27□□□□□ -0.29
NEDD8-201ENST00000250495 STPG4Q8N801 248 aa13.27□□□□□ -0.29
NEDD8-201ENST00000250495 NUPR1O60356 82 aa13.26□□□□□ -0.29
NEDD8-201ENST00000250495 RAB4AP20338 218 aa13.26□□□□□ -0.29
NEDD8-201ENST00000250495 CDC42SE2Q9NRR3 84 aa13.26□□□□□ -0.29
NEDD8-201ENST00000250495 LINC00474Q9P2X8 69 aa13.26□□□□□ -0.29
NEDD8-201ENST00000250495 TRBV27A0A0K0K1C4 114 aa13.25□□□□□ -0.29
NEDD8-201ENST00000250495 MRPL52Q86TS9 123 aaKnown RBP13.25□□□□□ -0.29
NEDD8-201ENST00000250495 CD164L2Q6UWJ8 174 aa13.24□□□□□ -0.29
NEDD8-201ENST00000250495 ZNF664Q8N3J9 261 aa13.24□□□□□ -0.29
NEDD8-201ENST00000250495 A0A096LNI7 61 aa13.23□□□□□ -0.29
NEDD8-201ENST00000250495 VCYO14598 125 aa13.23□□□□□ -0.29
NEDD8-201ENST00000250495 AMN1Q8IY45 258 aa13.23□□□□□ -0.29
NEDD8-201ENST00000250495 ZNF561-AS1K7EIQ3 104 aa13.22□□□□□ -0.29
NEDD8-201ENST00000250495 PPP1R17O96001 155 aa13.22□□□□□ -0.29
NEDD8-201ENST00000250495 FAM104BQ5XKR9 115 aa13.22□□□□□ -0.29
NEDD8-201ENST00000250495 CHCHD1Q96BP2 118 aaKnown RBP13.22□□□□□ -0.29
NEDD8-201ENST00000250495 SMAGPQ0VAQ4 97 aa13.21□□□□□ -0.29
NEDD8-201ENST00000250495 LINC00526Q96FQ7 95 aa13.21□□□□□ -0.29
NEDD8-201ENST00000250495 CARD19Q96LW7 228 aa13.21□□□□□ -0.29
NEDD8-201ENST00000250495 FCER1GP30273 86 aa13.2□□□□□ -0.3
NEDD8-201ENST00000250495 HSBP1O75506 76 aa13.19□□□□□ -0.3
NEDD8-201ENST00000250495 PRR3P79522 188 aaKnown RBP13.19□□□□□ -0.3
NEDD8-201ENST00000250495 SYCNQ0VAF6 134 aa13.19□□□□□ -0.3
NEDD8-201ENST00000250495 PPBPP02775 128 aa13.18□□□□□ -0.3
NEDD8-201ENST00000250495 LAMTOR2Q9Y2Q5 125 aa13.18□□□□□ -0.3
NEDD8-201ENST00000250495 CSDC2Q9Y534 153 aaKnown RBP13.18□□□□□ -0.3
NEDD8-201ENST00000250495 SMKR1H3BMG3 65 aa13.17□□□□□ -0.3
NEDD8-201ENST00000250495 MALP21145 153 aa13.17□□□□□ -0.3
NEDD8-201ENST00000250495 SUMO2P61956 95 aaKnown RBP13.17□□□□□ -0.3
NEDD8-201ENST00000250495 ORMDL3Q8N138 153 aa13.17□□□□□ -0.3
NEDD8-201ENST00000250495 KIR2DL4Q99706 377 aa13.17□□□□□ -0.3
NEDD8-201ENST00000250495 NRACQ8N912 160 aa13.16□□□□□ -0.3
NEDD8-201ENST00000250495 LINC01600Q96MT4 127 aa13.16□□□□□ -0.3
NEDD8-201ENST00000250495 MRPL51Q4U2R6 128 aaKnown RBP13.15□□□□□ -0.3
NEDD8-201ENST00000250495 URB1-AS1Q96HZ7 61 aa13.15□□□□□ -0.3
NEDD8-201ENST00000250495 UBE2D4Q9Y2X8 147 aa13.15□□□□□ -0.3
NEDD8-201ENST00000250495 UBR4Q5T4S7 5183 aa13.15□□□□□ -0.3
NEDD8-201ENST00000250495 COX7A2LO14548 114 aa13.14□□□□□ -0.31
NEDD8-201ENST00000250495 LINC00614P0C842 121 aa13.14□□□□□ -0.31
NEDD8-201ENST00000250495 PRELID3AQ96N28 172 aa13.14□□□□□ -0.31
NEDD8-201ENST00000250495 IGLV4-69A0A075B6H9 119 aa13.13□□□□□ -0.31
NEDD8-201ENST00000250495 LOC107984640A0A0U1RRK4 108 aa13.13□□□□□ -0.31
NEDD8-201ENST00000250495 PCP4L1A6NKN8 68 aa13.13□□□□□ -0.31
NEDD8-201ENST00000250495 D6R8Y8 96 aa13.13□□□□□ -0.31
NEDD8-201ENST00000250495 SPINK6Q6UWN8 80 aa13.13□□□□□ -0.31
NEDD8-201ENST00000250495 PTTG1IPP53801 180 aa13.12□□□□□ -0.31
NEDD8-201ENST00000250495 Q6ZRP5 223 aa13.12□□□□□ -0.31
NEDD8-201ENST00000250495 TRAV13-1A0A0B4J241 112 aa13.11□□□□□ -0.31
NEDD8-201ENST00000250495 SCGB1D1O95968 90 aa13.11□□□□□ -0.31
NEDD8-201ENST00000250495 CKS2P33552 79 aa13.11□□□□□ -0.31
NEDD8-201ENST00000250495 C20orf78Q9BR46 151 aa13.11□□□□□ -0.31
NEDD8-201ENST00000250495 TIMM21Q9BVV7 248 aa13.11□□□□□ -0.31
NEDD8-201ENST00000250495 APOMO95445 188 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 GAGE2BQ13066 116 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 RNASE13Q5GAN3 156 aaKnown RBP13.1□□□□□ -0.31
NEDD8-201ENST00000250495 REG3GQ6UW15 175 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 FAM19A2Q8N3H0 131 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 C2orf48Q96LS8 159 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 CAMK2N2Q96S95 79 aa13.1□□□□□ -0.31
NEDD8-201ENST00000250495 TNXBP22105 4242 aa13.09□□□□□ -0.31
NEDD8-201ENST00000250495 TCAPO15273 167 aa13.09□□□□□ -0.31
NEDD8-201ENST00000250495 TEX43Q6ZNM6 134 aa13.09□□□□□ -0.31
NEDD8-201ENST00000250495 FA2HQ7L5A8 372 aa13.09□□□□□ -0.31
NEDD8-201ENST00000250495 TSTD3H0UI37 97 aa13.08□□□□□ -0.32
NEDD8-201ENST00000250495 KRTDAPP60985 99 aa13.08□□□□□ -0.32
NEDD8-201ENST00000250495 RPL32P62910 135 aaKnown RBP13.08□□□□□ -0.32
NEDD8-201ENST00000250495 C5orf38Q86SI9 138 aa13.08□□□□□ -0.32
NEDD8-201ENST00000250495 A0A0J9YXV3 536 aa13.07□□□□□ -0.32
NEDD8-201ENST00000250495 LINC01546A6NGU7 62 aa13.07□□□□□ -0.32
NEDD8-201ENST00000250495 C3orf79P0CE67 100 aa13.07□□□□□ -0.32
NEDD8-201ENST00000250495 SRSF9Q13242 221 aaKnown RBP eCLIP13.07□□□□□ -0.32
NEDD8-201ENST00000250495 MAP1LC3AQ9H492 121 aa13.07□□□□□ -0.32
NEDD8-201ENST00000250495 PRSS47A8MTI9 375 aa13.06□□□□□ -0.32
NEDD8-201ENST00000250495 Q6ZUT4 128 aa13.06□□□□□ -0.32
NEDD8-201ENST00000250495 LEPROTL1O95214 131 aa13.05□□□□□ -0.32
NEDD8-201ENST00000250495 NPYP01303 97 aa13.05□□□□□ -0.32
NEDD8-201ENST00000250495 NXT2Q9NPJ8 142 aaKnown RBP13.05□□□□□ -0.32
NEDD8-201ENST00000250495 HSPB8Q9UJY1 196 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms