RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 C9JQL5 133 aa12.01□□□□□ -0.49
CLN3-262ENST00000637699 APCSP02743 223 aa12.01□□□□□ -0.49
CLN3-262ENST00000637699 SMIM15Q7Z3B0 74 aa12.01□□□□□ -0.49
CLN3-262ENST00000637699 CARD19Q96LW7 228 aa12.01□□□□□ -0.49
CLN3-262ENST00000637699 OSTCQ9NRP0 149 aa12.01□□□□□ -0.49
CLN3-262ENST00000637699 NCR2O95944 276 aa12□□□□□ -0.49
CLN3-262ENST00000637699 SRSF3P84103 164 aaKnown RBP12□□□□□ -0.49
CLN3-262ENST00000637699 TEX261Q6UWH6 196 aa12□□□□□ -0.49
CLN3-262ENST00000637699 OR5A1Q8NGJ0 315 aa12□□□□□ -0.49
CLN3-262ENST00000637699 TSKUQ8WUA8 353 aa12□□□□□ -0.49
CLN3-262ENST00000637699 PKIGQ9Y2B9 76 aa12□□□□□ -0.49
CLN3-262ENST00000637699 HIGD1CA8MV81 97 aa11.99□□□□□ -0.49
CLN3-262ENST00000637699 H7C423 109 aa11.99□□□□□ -0.49
CLN3-262ENST00000637699 CCL25O15444 150 aa11.99□□□□□ -0.49
CLN3-262ENST00000637699 IGHV1-58A0A0C4DH39 117 aa11.98□□□□□ -0.49
CLN3-262ENST00000637699 V9GYV3 84 aa11.98□□□□□ -0.49
CLN3-262ENST00000637699 LINC00959A0A1B0GUT2 108 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 A0A1B0GUT8 65 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 SDHAF1A6NFY7 115 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 TMEM241Q24JQ0 296 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 ISOC2Q96AB3 205 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 BTF3L4Q96K17 158 aa11.97□□□□□ -0.49
CLN3-262ENST00000637699 FAM231BA6NCW3 169 aa11.96□□□□□ -0.49
CLN3-262ENST00000637699 ZNF25P17030 456 aaPredicted RBP11.96□□□□□ -0.49
CLN3-262ENST00000637699 RPL23P62829 140 aaKnown RBP11.96□□□□□ -0.49
CLN3-262ENST00000637699 IFITM2Q01629 132 aa11.96□□□□□ -0.49
CLN3-262ENST00000637699 SYCNQ0VAF6 134 aa11.96□□□□□ -0.49
CLN3-262ENST00000637699 BORCS7Q96B45 105 aa11.96□□□□□ -0.49
CLN3-262ENST00000637699 TMEM101Q96IK0 257 aa11.96□□□□□ -0.49
CLN3-262ENST00000637699 ZNF561-AS1K7EIQ3 104 aa11.95□□□□□ -0.5
CLN3-262ENST00000637699 PMCHP20382 165 aa11.95□□□□□ -0.5
CLN3-262ENST00000637699 GAGE2BQ13066 116 aa11.95□□□□□ -0.5
CLN3-262ENST00000637699 FAM74A3Q4VXF1 159 aa11.95□□□□□ -0.5
CLN3-262ENST00000637699 PTTG1IPP53801 180 aa11.94□□□□□ -0.5
CLN3-262ENST00000637699 NUP35Q8NFH5 326 aa11.94□□□□□ -0.5
CLN3-262ENST00000637699 TMEM191AQ9H0A3 160 aa11.94□□□□□ -0.5
CLN3-262ENST00000637699 TRBV6-5A0A0K0K1A5 114 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 RAB4AP20338 218 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 PEA15Q15121 130 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 SS18Q15532 418 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 ADIRFQ15847 76 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 NDUFA5Q16718 116 aa11.93□□□□□ -0.5
CLN3-262ENST00000637699 I3L3M4 83 aa11.92□□□□□ -0.5
CLN3-262ENST00000637699 NAT8Q9UHE5 227 aa11.92□□□□□ -0.5
CLN3-262ENST00000637699 A0A1W2PNN7 141 aa11.91□□□□□ -0.5
CLN3-262ENST00000637699 CAMPP49913 170 aa11.91□□□□□ -0.5
CLN3-262ENST00000637699 CD164L2Q6UWJ8 174 aa11.91□□□□□ -0.5
CLN3-262ENST00000637699 AMN1Q8IY45 258 aa11.91□□□□□ -0.5
CLN3-262ENST00000637699 TMEM242Q9NWH2 141 aa11.91□□□□□ -0.5
CLN3-262ENST00000637699 LOC107984640A0A0U1RRK4 108 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 ESDP10768 282 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 RIGQ13278 110 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 SMDT1Q9H4I9 107 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 ST20Q9HBF5 79 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 PSORS1C2Q9UIG4 136 aa11.9□□□□□ -0.5
CLN3-262ENST00000637699 IGLV4-69A0A075B6H9 119 aa11.89□□□□□ -0.51
CLN3-262ENST00000637699 TSHBP01222 138 aa11.89□□□□□ -0.51
CLN3-262ENST00000637699 MRAP2Q96G30 205 aa11.89□□□□□ -0.51
CLN3-262ENST00000637699 CDC42SE2Q9NRR3 84 aa11.89□□□□□ -0.51
CLN3-262ENST00000637699 NAT8BQ9UHF3 227 aa11.89□□□□□ -0.51
CLN3-262ENST00000637699 SMIM27A0A1W2PRY6 76 aa11.88□□□□□ -0.51
CLN3-262ENST00000637699 SMKR1H3BMG3 65 aa11.88□□□□□ -0.51
CLN3-262ENST00000637699 MT-ND6P03923 174 aa11.88□□□□□ -0.51
CLN3-262ENST00000637699 POLR2KP53803 58 aaKnown RBP11.88□□□□□ -0.51
CLN3-262ENST00000637699 MALP21145 153 aa11.87□□□□□ -0.51
CLN3-262ENST00000637699 ZNF664Q8N3J9 261 aa11.87□□□□□ -0.51
CLN3-262ENST00000637699 C9orf116Q5BN46 136 aaPredicted RBP11.86□□□□□ -0.51
CLN3-262ENST00000637699 TRBV27A0A0K0K1C4 114 aa11.85□□□□□ -0.51
CLN3-262ENST00000637699 C1orf137Q5JT78 98 aa11.85□□□□□ -0.51
CLN3-262ENST00000637699 MRPL52Q86TS9 123 aaKnown RBP11.85□□□□□ -0.51
CLN3-262ENST00000637699 NRACQ8N912 160 aa11.85□□□□□ -0.51
CLN3-262ENST00000637699 CAMK2N2Q96S95 79 aa11.85□□□□□ -0.51
CLN3-262ENST00000637699 COX7A2LO14548 114 aa11.84□□□□□ -0.51
CLN3-262ENST00000637699 RAB14P61106 215 aa11.84□□□□□ -0.51
CLN3-262ENST00000637699 PHF5AQ7RTV0 110 aaKnown RBP11.84□□□□□ -0.51
CLN3-262ENST00000637699 PRR26Q8N8Z3 221 aa11.84□□□□□ -0.51
CLN3-262ENST00000637699 C7orf77A4D0Y5 90 aa11.83□□□□□ -0.52
CLN3-262ENST00000637699 APOMO95445 188 aa11.83□□□□□ -0.52
CLN3-262ENST00000637699 RPL18AQ02543 176 aaKnown RBP11.83□□□□□ -0.52
CLN3-262ENST00000637699 MRPL51Q4U2R6 128 aaKnown RBP11.83□□□□□ -0.52
CLN3-262ENST00000637699 FAM104BQ5XKR9 115 aa11.83□□□□□ -0.52
CLN3-262ENST00000637699 C1orf196B1AJZ1 125 aa11.82□□□□□ -0.52
CLN3-262ENST00000637699 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.82□□□□□ -0.52
CLN3-262ENST00000637699 VCYO14598 125 aa11.81□□□□□ -0.52
CLN3-262ENST00000637699 RNASE13Q5GAN3 156 aaKnown RBP11.81□□□□□ -0.52
CLN3-262ENST00000637699 OPRPNQ99935 248 aaPredicted RBP11.81□□□□□ -0.52
CLN3-262ENST00000637699 SUMO2P61956 95 aaKnown RBP11.8□□□□□ -0.52
CLN3-262ENST00000637699 CLLU1Q5K131 121 aa11.8□□□□□ -0.52
CLN3-262ENST00000637699 A0A1B0GW15 77 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 PPP1R17O96001 155 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 FCER1GP30273 86 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 MRPL54Q6P161 138 aaKnown RBP11.79□□□□□ -0.52
CLN3-262ENST00000637699 C5orf38Q86SI9 138 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 C2orf48Q96LS8 159 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 MUC2Q02817 5179 aa11.79□□□□□ -0.52
CLN3-262ENST00000637699 TRAV13-1A0A0B4J241 112 aa11.78□□□□□ -0.52
CLN3-262ENST00000637699 A0A1B0GXF2 115 aa11.78□□□□□ -0.52
CLN3-262ENST00000637699 DIRC1Q969H9 104 aa11.78□□□□□ -0.52
CLN3-262ENST00000637699 LINC00862A6NCI5 91 aa11.77□□□□□ -0.53
CLN3-262ENST00000637699 ATP6V1G1O75348 118 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms