RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TRGC2P03986 189 aa8.79□□□□□ -1
CLN3-249ENST00000636685 CRIP1P50238 77 aa8.79□□□□□ -1
CLN3-249ENST00000636685 NDUFA6P56556 154 aa8.79□□□□□ -1
CLN3-249ENST00000636685 IQCJQ1A5X6 159 aa8.79□□□□□ -1
CLN3-249ENST00000636685 IGHV1-24A0A0C4DH33 117 aa8.78□□□□□ -1
CLN3-249ENST00000636685 GNG4P50150 75 aa8.78□□□□□ -1
CLN3-249ENST00000636685 MT-ND6P03923 174 aa8.77□□□□□ -1.01
CLN3-249ENST00000636685 TRGC1P0CF51 173 aa8.77□□□□□ -1.01
CLN3-249ENST00000636685 OSTCQ9NRP0 149 aa8.77□□□□□ -1.01
CLN3-249ENST00000636685 GVQW2A0A096LPI5 108 aaPredicted RBP8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BKO60814 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 SH2D1AO60880 128 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BJP06899 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BOP23527 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BBP33778 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BDP58876 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BCP62807 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST2H2BEQ16778 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 COX19Q49B96 90 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 C1orf137Q5JT78 98 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BHQ93079 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BNQ99877 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 HIST1H2BMQ99879 126 aa8.76□□□□□ -1.01
CLN3-249ENST00000636685 TRBV20OR9-2A0A075B6H5 130 aa8.75□□□□□ -1.01
CLN3-249ENST00000636685 A0A1B0GUV1 79 aa8.75□□□□□ -1.01
CLN3-249ENST00000636685 F5H697 171 aa8.75□□□□□ -1.01
CLN3-249ENST00000636685 FER1L6-AS1Q8NA97 138 aa8.75□□□□□ -1.01
CLN3-249ENST00000636685 DIRC1Q969H9 104 aa8.75□□□□□ -1.01
CLN3-249ENST00000636685 IGLV1-50A0A075B6I6 118 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 IGKV3OR2-268A0A0C4DH90 116 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 A0A1W2PNN7 141 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 SMIM6P0DI80 62 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 S100A2P29034 98 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 CENPWQ5EE01 88 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 SMIM12Q96EX1 92 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 LINC00526Q96FQ7 95 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 C12orf57Q99622 126 aa8.74□□□□□ -1.01
CLN3-249ENST00000636685 K7EN84 100 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 PEX7O00628 323 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 FAM231DQ6ZW35 169 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 Q86TA4 180 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 BAGE2Q86Y30 109 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 TMEM243Q9BU79 118 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 TRAPPC1Q9Y5R8 145 aa8.73□□□□□ -1.01
CLN3-249ENST00000636685 LINC01559Q495D7 138 aa8.72□□□□□ -1.01
CLN3-249ENST00000636685 COA6Q5JTJ3 125 aaKnown RBP8.72□□□□□ -1.01
CLN3-249ENST00000636685 OR10AG1Q8NH19 301 aa8.72□□□□□ -1.01
CLN3-249ENST00000636685 PKIGQ9Y2B9 76 aa8.72□□□□□ -1.01
CLN3-249ENST00000636685 H0Y9J4 135 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 KRTAP1-4P0C5Y4 121 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 AMTP48728 403 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 PTTG1IPP53801 180 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 UBE2G1P62253 170 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 S100A12P80511 92 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 FAM162BQ5T6X4 162 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 CHCHD10Q8WYQ3 142 aaPredicted RBP8.71□□□□□ -1.02
CLN3-249ENST00000636685 FMC1Q96HJ9 113 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 CARD19Q96LW7 228 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 V9GYV3 84 aa8.71□□□□□ -1.02
CLN3-249ENST00000636685 MUC21A0A140T8X8 626 aa8.7□□□□□ -1.02
CLN3-249ENST00000636685 GATCO43716 136 aaKnown RBP8.7□□□□□ -1.02
CLN3-249ENST00000636685 TSPAN13O95857 204 aa8.7□□□□□ -1.02
CLN3-249ENST00000636685 IGLV7-43P04211 117 aa8.7□□□□□ -1.02
CLN3-249ENST00000636685 GAGE2BQ13066 116 aa8.7□□□□□ -1.02
CLN3-249ENST00000636685 HIST3H2BBQ8N257 126 aa8.7□□□□□ -1.02
CLN3-249ENST00000636685 PHF5AQ7RTV0 110 aaKnown RBP8.69□□□□□ -1.02
CLN3-249ENST00000636685 GNB1LQ9BYB4 327 aa8.69□□□□□ -1.02
CLN3-249ENST00000636685 SMIM27A0A1W2PRY6 76 aa8.68□□□□□ -1.02
CLN3-249ENST00000636685 XKRY2A2RUG3 117 aa8.68□□□□□ -1.02
CLN3-249ENST00000636685 UBE2D1P51668 147 aa8.68□□□□□ -1.02
CLN3-249ENST00000636685 SSTP61278 116 aa8.68□□□□□ -1.02
CLN3-249ENST00000636685 RASL11AQ6T310 242 aa8.68□□□□□ -1.02
CLN3-249ENST00000636685 UBE2L6O14933 153 aa8.67□□□□□ -1.02
CLN3-249ENST00000636685 FOXI1Q12951 378 aa8.67□□□□□ -1.02
CLN3-249ENST00000636685 COX8CQ7Z4L0 72 aa8.67□□□□□ -1.02
CLN3-249ENST00000636685 NUDT10Q8NFP7 164 aa8.67□□□□□ -1.02
CLN3-249ENST00000636685 NUDT11Q96G61 164 aa8.67□□□□□ -1.02
CLN3-249ENST00000636685 RNASE7Q9H1E1 156 aaKnown RBP8.67□□□□□ -1.02
CLN3-249ENST00000636685 IFITM10A6NMD0 228 aa8.66□□□□□ -1.02
CLN3-249ENST00000636685 C9orf116Q5BN46 136 aaPredicted RBP8.66□□□□□ -1.02
CLN3-249ENST00000636685 OR10D4PQ8NGN7 298 aa8.66□□□□□ -1.02
CLN3-249ENST00000636685 MLST8Q9BVC4 326 aa8.66□□□□□ -1.02
CLN3-249ENST00000636685 A8MWL6 223 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 M0QY20 66 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 LTAP01374 205 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 SYCNQ0VAF6 134 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 TMEM18Q96B42 140 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 MRPL18Q9H0U6 180 aaKnown RBP8.65□□□□□ -1.02
CLN3-249ENST00000636685 NIT2Q9NQR4 276 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 ZFP30Q9Y2G7 519 aa8.65□□□□□ -1.02
CLN3-249ENST00000636685 LOC107984640A0A0U1RRK4 108 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 SMIM17P0DL12 118 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 FABP4P15090 132 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 RPL13AP40429 203 aaKnown RBP8.64□□□□□ -1.03
CLN3-249ENST00000636685 CT83Q5H943 113 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 TSKUQ8WUA8 353 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 NAT8BQ9UHF3 227 aa8.64□□□□□ -1.03
CLN3-249ENST00000636685 IGHV1-58A0A0C4DH39 117 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms