RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 FAM104BQ5XKR9 115 aa9.54□□□□□ -0.88
LINC00643-206ENST00000623985 CFAP161Q6P656 301 aa9.54□□□□□ -0.88
LINC00643-206ENST00000623985 HERC1Q15751 4861 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 LINC00862A6NCI5 91 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 VCYO14598 125 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 S100A8P05109 93 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 FCER1GP30273 86 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 CAMPP49913 170 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 HBBP68871 147 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 MRPL51Q4U2R6 128 aaKnown RBP9.53□□□□□ -0.88
LINC00643-206ENST00000623985 KIR2DL4Q99706 377 aa9.53□□□□□ -0.88
LINC00643-206ENST00000623985 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
LINC00643-206ENST00000623985 SMAGPQ0VAQ4 97 aa9.52□□□□□ -0.89
LINC00643-206ENST00000623985 SDIM1Q6ZPB5 146 aa9.52□□□□□ -0.89
LINC00643-206ENST00000623985 LINC00959A0A1B0GUT2 108 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 A0A1B0GXF2 115 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 F8W036 122 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 RAB14P61106 215 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 FOXI1Q12951 378 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 MRPL54Q6P161 138 aaKnown RBP9.51□□□□□ -0.89
LINC00643-206ENST00000623985 CDC42SE2Q9NRR3 84 aa9.51□□□□□ -0.89
LINC00643-206ENST00000623985 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.51□□□□□ -0.89
LINC00643-206ENST00000623985 TRBV24-1A0A075B6N3 115 aa9.5□□□□□ -0.89
LINC00643-206ENST00000623985 GVQW2A0A096LPI5 108 aaPredicted RBP9.5□□□□□ -0.89
LINC00643-206ENST00000623985 SLPIP03973 132 aa9.5□□□□□ -0.89
LINC00643-206ENST00000623985 CKS2P33552 79 aa9.5□□□□□ -0.89
LINC00643-206ENST00000623985 RPL32P62910 135 aaKnown RBP9.5□□□□□ -0.89
LINC00643-206ENST00000623985 PNRC1Q12796 327 aaPredicted RBP9.5□□□□□ -0.89
LINC00643-206ENST00000623985 CIRBPQ14011 172 aaKnown RBP9.5□□□□□ -0.89
LINC00643-206ENST00000623985 C20orf78Q9BR46 151 aa9.5□□□□□ -0.89
LINC00643-206ENST00000623985 CSDC2Q9Y534 153 aaKnown RBP9.5□□□□□ -0.89
LINC00643-206ENST00000623985 TCAPO15273 167 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 CCL25O15444 150 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 XCL1P47992 114 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 KRTAP10-4P60372 401 aaPredicted RBP9.49□□□□□ -0.89
LINC00643-206ENST00000623985 SS18Q15532 418 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 HIGD2BQ4VC39 106 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 ATP5L2Q7Z4Y8 100 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 ZNF664Q8N3J9 261 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 UBE2D4Q9Y2X8 147 aa9.49□□□□□ -0.89
LINC00643-206ENST00000623985 PKHD1L1Q86WI1 4243 aa9.48□□□□□ -0.89
LINC00643-206ENST00000623985 D6R8Y8 96 aa9.48□□□□□ -0.89
LINC00643-206ENST00000623985 PANO1I0J062 215 aa9.48□□□□□ -0.89
LINC00643-206ENST00000623985 CLLU1Q5K131 121 aa9.48□□□□□ -0.89
LINC00643-206ENST00000623985 TMEM18Q96B42 140 aa9.48□□□□□ -0.89
LINC00643-206ENST00000623985 PHOX2AO14813 284 aa9.47□□□□□ -0.89
LINC00643-206ENST00000623985 TNFRSF6BO95407 300 aa9.47□□□□□ -0.89
LINC00643-206ENST00000623985 PPBPP02775 128 aa9.47□□□□□ -0.89
LINC00643-206ENST00000623985 SMIM2Q9BVW6 85 aa9.47□□□□□ -0.89
LINC00643-206ENST00000623985 IGHV1-58A0A0C4DH39 117 aa9.46□□□□□ -0.9
LINC00643-206ENST00000623985 RPL37AP61513 92 aaKnown RBP9.46□□□□□ -0.9
LINC00643-206ENST00000623985 CD164L2Q6UWJ8 174 aa9.46□□□□□ -0.9
LINC00643-206ENST00000623985 SPACA4Q8TDM5 124 aa9.46□□□□□ -0.9
LINC00643-206ENST00000623985 TIMM21Q9BVV7 248 aa9.46□□□□□ -0.9
LINC00643-206ENST00000623985 NPYP01303 97 aa9.45□□□□□ -0.9
LINC00643-206ENST00000623985 ANAPC16Q96DE5 110 aa9.45□□□□□ -0.9
LINC00643-206ENST00000623985 C1orf196B1AJZ1 125 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 MT-ND4LP03901 98 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 CHTF8P0CG12 524 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 IFITM2Q01629 132 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 Q6ZUT4 128 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 ORMDL3Q8N138 153 aa9.44□□□□□ -0.9
LINC00643-206ENST00000623985 KRTAP29-1A8MX34 341 aaPredicted RBP9.43□□□□□ -0.9
LINC00643-206ENST00000623985 RNASE13Q5GAN3 156 aaKnown RBP9.43□□□□□ -0.9
LINC00643-206ENST00000623985 PKIGQ9Y2B9 76 aa9.43□□□□□ -0.9
LINC00643-206ENST00000623985 LRP1Q07954 4544 aaKnown RBP9.42□□□□□ -0.9
LINC00643-206ENST00000623985 A0A087WYN8 130 aa9.42□□□□□ -0.9
LINC00643-206ENST00000623985 COX6A2Q02221 97 aa9.42□□□□□ -0.9
LINC00643-206ENST00000623985 FAT3Q8TDW7 4589 aa9.42□□□□□ -0.9
LINC00643-206ENST00000623985 J3QL48 77 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 COX7A2LO14548 114 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 RPL39P62891 51 aaKnown RBP9.41□□□□□ -0.9
LINC00643-206ENST00000623985 UQCC3Q6UW78 93 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 TMEM136Q6ZRR5 245 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 CARD19Q96LW7 228 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 PRELID3AQ96N28 172 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 SPANXA1Q9NS26 97 aa9.41□□□□□ -0.9
LINC00643-206ENST00000623985 TRAV13-1A0A0B4J241 112 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 ZNF561-AS1K7EIQ3 104 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 MALP21145 153 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 PRSS3P2Q8NHM4 247 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 PLAC8Q9NZF1 115 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 LAMTOR2Q9Y2Q5 125 aa9.4□□□□□ -0.9
LINC00643-206ENST00000623985 MRPS36P82909 103 aaKnown RBP9.39□□□□□ -0.91
LINC00643-206ENST00000623985 LINC00526Q96FQ7 95 aa9.39□□□□□ -0.91
LINC00643-206ENST00000623985 DPH3Q96FX2 82 aa9.39□□□□□ -0.91
LINC00643-206ENST00000623985 A0A096LNI7 61 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 IGKV2-24A0A0C4DH68 120 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 PRSS47A8MTI9 375 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 RAB5AP20339 215 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 MAJINQ3KP22 176 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 LINC00474Q9P2X8 69 aa9.38□□□□□ -0.91
LINC00643-206ENST00000623985 APOMO95445 188 aa9.37□□□□□ -0.91
LINC00643-206ENST00000623985 ADCYAP1P18509 176 aa9.37□□□□□ -0.91
LINC00643-206ENST00000623985 SYCNQ0VAF6 134 aa9.37□□□□□ -0.91
LINC00643-206ENST00000623985 FAM104AQ969W3 186 aa9.37□□□□□ -0.91
LINC00643-206ENST00000623985 MAP1LC3AQ9H492 121 aa9.37□□□□□ -0.91
LINC00643-206ENST00000623985 IGLV4-69A0A075B6H9 119 aa9.36□□□□□ -0.91
LINC00643-206ENST00000623985 OXTP01178 125 aa9.36□□□□□ -0.91
LINC00643-206ENST00000623985 IFI27P40305 119 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms