RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 VCYO14598 125 aa12.17□□□□□ -0.46
CCDC28A-203ENST00000617445 GAS8-AS1O95177 125 aa12.17□□□□□ -0.46
CCDC28A-203ENST00000617445 ADIRFQ15847 76 aa12.17□□□□□ -0.46
CCDC28A-203ENST00000617445 AMN1Q8IY45 258 aa12.17□□□□□ -0.46
CCDC28A-203ENST00000617445 TMEM242Q9NWH2 141 aa12.17□□□□□ -0.46
CCDC28A-203ENST00000617445 GVQW2A0A096LPI5 108 aaPredicted RBP12.16□□□□□ -0.46
CCDC28A-203ENST00000617445 SMAGPQ0VAQ4 97 aa12.16□□□□□ -0.46
CCDC28A-203ENST00000617445 LINC00959A0A1B0GUT2 108 aa12.15□□□□□ -0.46
CCDC28A-203ENST00000617445 C7orf77A4D0Y5 90 aa12.15□□□□□ -0.46
CCDC28A-203ENST00000617445 FOXI1Q12951 378 aa12.15□□□□□ -0.46
CCDC28A-203ENST00000617445 SPACA4Q8TDM5 124 aa12.15□□□□□ -0.46
CCDC28A-203ENST00000617445 CDC42SE2Q9NRR3 84 aa12.15□□□□□ -0.46
CCDC28A-203ENST00000617445 A0A1B0GW15 77 aa12.14□□□□□ -0.47
CCDC28A-203ENST00000617445 PPP1R2P9O14990 202 aa12.14□□□□□ -0.47
CCDC28A-203ENST00000617445 SS18Q15532 418 aa12.14□□□□□ -0.47
CCDC28A-203ENST00000617445 HIGD2BQ4VC39 106 aa12.14□□□□□ -0.47
CCDC28A-203ENST00000617445 PKIGQ9Y2B9 76 aa12.14□□□□□ -0.47
CCDC28A-203ENST00000617445 A0A087WYN8 130 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 FCER1GP30273 86 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 XCL1P47992 114 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 SUMO2P61956 95 aaKnown RBP12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 ZNF664Q8N3J9 261 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 KIR2DL4Q99706 377 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 PLAC8Q9NZF1 115 aa12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 CSDC2Q9Y534 153 aaKnown RBP12.13□□□□□ -0.47
CCDC28A-203ENST00000617445 IGHV1-58A0A0C4DH39 117 aa12.12□□□□□ -0.47
CCDC28A-203ENST00000617445 SMIM27A0A1W2PRY6 76 aa12.12□□□□□ -0.47
CCDC28A-203ENST00000617445 LINC00862A6NCI5 91 aa12.12□□□□□ -0.47
CCDC28A-203ENST00000617445 CCL25O15444 150 aa12.12□□□□□ -0.47
CCDC28A-203ENST00000617445 CHTF8P0CG12 524 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 COX6A2Q02221 97 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 SERTAD4-AS1Q5TG53 156 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 FAM104BQ5XKR9 115 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 CD164L2Q6UWJ8 174 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 NRACQ8N912 160 aa12.11□□□□□ -0.47
CCDC28A-203ENST00000617445 TCAPO15273 167 aa12.1□□□□□ -0.47
CCDC28A-203ENST00000617445 C20orf78Q9BR46 151 aa12.1□□□□□ -0.47
CCDC28A-203ENST00000617445 SMKR1H3BMG3 65 aa12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 S100A8P05109 93 aa12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 MRPL51Q4U2R6 128 aaKnown RBP12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 CLLU1Q5K131 121 aa12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 TMEM18Q96B42 140 aa12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 LINC00474Q9P2X8 69 aa12.09□□□□□ -0.47
CCDC28A-203ENST00000617445 TRBV24-1A0A075B6N3 115 aa12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 C1orf196B1AJZ1 125 aa12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 RPL32P62910 135 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 Q6ZRU5 148 aa12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 PRSS3P2Q8NHM4 247 aa12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 C7orf33Q8WU49 177 aa12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 LRP1Q07954 4544 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-203ENST00000617445 CAMPP49913 170 aa12.07□□□□□ -0.48
CCDC28A-203ENST00000617445 TIMM21Q9BVV7 248 aa12.07□□□□□ -0.48
CCDC28A-203ENST00000617445 F8W036 122 aa12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 ZNF561-AS1K7EIQ3 104 aa12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 CKS2P33552 79 aa12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 HNRNPA3P51991 378 aaKnown RBP12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 MAJINQ3KP22 176 aa12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 UBE2D4Q9Y2X8 147 aa12.06□□□□□ -0.48
CCDC28A-203ENST00000617445 PNRC1Q12796 327 aaPredicted RBP12.05□□□□□ -0.48
CCDC28A-203ENST00000617445 IGKV2-24A0A0C4DH68 120 aa12.04□□□□□ -0.48
CCDC28A-203ENST00000617445 HBBP68871 147 aa12.04□□□□□ -0.48
CCDC28A-203ENST00000617445 CARD19Q96LW7 228 aa12.04□□□□□ -0.48
CCDC28A-203ENST00000617445 COX7A2LO14548 114 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 PPBPP02775 128 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 MALP21145 153 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 IFITM2Q01629 132 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 SYCNQ0VAF6 134 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 STPG4Q8N801 248 aa12.03□□□□□ -0.48
CCDC28A-203ENST00000617445 PKHD1L1Q86WI1 4243 aa12.02□□□□□ -0.48
CCDC28A-203ENST00000617445 PHOX2AO14813 284 aa12.02□□□□□ -0.49
CCDC28A-203ENST00000617445 TNFRSF6BO95407 300 aa12.02□□□□□ -0.49
CCDC28A-203ENST00000617445 A0A096LNI7 61 aa12.01□□□□□ -0.49
CCDC28A-203ENST00000617445 A0A1B0GXF2 115 aa12.01□□□□□ -0.49
CCDC28A-203ENST00000617445 FAT3Q8TDW7 4589 aa12.01□□□□□ -0.49
CCDC28A-203ENST00000617445 TRAV13-1A0A0B4J241 112 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 MRPL54Q6P161 138 aaKnown RBP12□□□□□ -0.49
CCDC28A-203ENST00000617445 UQCC3Q6UW78 93 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 ATP5L2Q7Z4Y8 100 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 ANAPC16Q96DE5 110 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 LINC00526Q96FQ7 95 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 SMIM2Q9BVW6 85 aa12□□□□□ -0.49
CCDC28A-203ENST00000617445 D6R8Y8 96 aa11.99□□□□□ -0.49
CCDC28A-203ENST00000617445 APOMO95445 188 aa11.99□□□□□ -0.49
CCDC28A-203ENST00000617445 MT-ND4LP03901 98 aa11.99□□□□□ -0.49
CCDC28A-203ENST00000617445 SPANXA1Q9NS26 97 aa11.99□□□□□ -0.49
CCDC28A-203ENST00000617445 Q6ZUT4 128 aa11.98□□□□□ -0.49
CCDC28A-203ENST00000617445 C2orf48Q96LS8 159 aa11.98□□□□□ -0.49
CCDC28A-203ENST00000617445 IGLV4-69A0A075B6H9 119 aa11.97□□□□□ -0.49
CCDC28A-203ENST00000617445 LOC107984640A0A0U1RRK4 108 aa11.97□□□□□ -0.49
CCDC28A-203ENST00000617445 RNASE13Q5GAN3 156 aaKnown RBP11.97□□□□□ -0.49
CCDC28A-203ENST00000617445 MRPS36P82909 103 aaKnown RBP11.96□□□□□ -0.49
CCDC28A-203ENST00000617445 ORMDL3Q8N138 153 aa11.96□□□□□ -0.49
CCDC28A-203ENST00000617445 NPYP01303 97 aa11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 PTTG1IPP53801 180 aa11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 RPL39P62891 51 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 PRR3P79522 188 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 TMEM136Q6ZRR5 245 aa11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 CAMK2N2Q96S95 79 aa11.95□□□□□ -0.5
CCDC28A-203ENST00000617445 F8WDY8 70 aa11.94□□□□□ -0.5
CCDC28A-203ENST00000617445 RAB5AP20339 215 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms