RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IGLV1-40P01703 118 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 VPREB3Q9UKI3 123 aa9.26□□□□□ -0.93
LIG1-221ENST00000613670 NXPH4O95158 308 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 Q9HAA7 133 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 EDA2RQ9HAV5 297 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 Q9UF83 564 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 H7C423 109 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 PSMB8P28062 276 aa9.25□□□□□ -0.93
LIG1-221ENST00000613670 NOP10Q9NPE3 64 aaKnown RBP9.24□□□□□ -0.93
LIG1-221ENST00000613670 ASH1LQ9NR48 2969 aaKnown RBP9.24□□□□□ -0.93
LIG1-221ENST00000613670 TINCRA0A1B0GVN0 87 aa9.24□□□□□ -0.93
LIG1-221ENST00000613670 C18orf65Q6ZTR6 163 aa9.24□□□□□ -0.93
LIG1-221ENST00000613670 ANKRD17O75179 2603 aaKnown RBP9.24□□□□□ -0.93
LIG1-221ENST00000613670 NDUFA7O95182 113 aa9.24□□□□□ -0.93
LIG1-221ENST00000613670 C6orf226Q5I0X4 101 aa9.24□□□□□ -0.93
LIG1-221ENST00000613670 EPG5Q9HCE0 2579 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 DEFB130BP0DP73 79 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 DEFB130AP0DP74 79 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 PIK3CD-AS1Q5SR53 167 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 ODF3Q96PU9 254 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 TMEM243Q9BU79 118 aa9.23□□□□□ -0.93
LIG1-221ENST00000613670 MRPS36P82909 103 aaKnown RBP9.22□□□□□ -0.93
LIG1-221ENST00000613670 C5orf38Q86SI9 138 aa9.22□□□□□ -0.93
LIG1-221ENST00000613670 ACANP16112 2415 aa9.22□□□□□ -0.93
LIG1-221ENST00000613670 HIST1H4AP62805 103 aaKnown RBP9.22□□□□□ -0.93
LIG1-221ENST00000613670 FAM19A4Q96LR4 140 aa9.22□□□□□ -0.93
LIG1-221ENST00000613670 DSCR9P59020 149 aa9.22□□□□□ -0.93
LIG1-221ENST00000613670 LINC00308Q8TCZ7 52 aa9.22□□□□□ -0.93
LIG1-221ENST00000613670 RBMY1BA6NDE4 496 aaKnown RBP9.21□□□□□ -0.93
LIG1-221ENST00000613670 RBMY1EA6NEQ0 496 aaKnown RBP9.21□□□□□ -0.93
LIG1-221ENST00000613670 RBMY1DP0C7P1 496 aaKnown RBP9.21□□□□□ -0.93
LIG1-221ENST00000613670 RBMY1A1P0DJD3 496 aaKnown RBP9.21□□□□□ -0.93
LIG1-221ENST00000613670 RBMY1CP0DJD4 496 aa9.21□□□□□ -0.93
LIG1-221ENST00000613670 Q6ZSN1 163 aa9.21□□□□□ -0.93
LIG1-221ENST00000613670 UBE2D4Q9Y2X8 147 aa9.21□□□□□ -0.93
LIG1-221ENST00000613670 PYGO1Q9Y3Y4 419 aa9.21□□□□□ -0.93
LIG1-221ENST00000613670 CLPSL2Q6UWE3 100 aa9.21□□□□□ -0.94
LIG1-221ENST00000613670 RELNP78509 3460 aa9.21□□□□□ -0.94
LIG1-221ENST00000613670 DOPEY1Q5JWR5 2465 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 LST1O00453 97 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 INAFM2P0DMQ5 153 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 MAP6D1Q9H9H5 199 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 DAZ2Q13117 558 aaKnown RBP9.2□□□□□ -0.94
LIG1-221ENST00000613670 Q6ZTI0 123 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 DAZ4Q86SG3 579 aaKnown RBP9.2□□□□□ -0.94
LIG1-221ENST00000613670 SND1-IT1Q9HBX3 110 aa9.2□□□□□ -0.94
LIG1-221ENST00000613670 DAZ3Q9NR90 486 aaKnown RBP9.2□□□□□ -0.94
LIG1-221ENST00000613670 CSMD1Q96PZ7 3565 aa9.19□□□□□ -0.94
LIG1-221ENST00000613670 ZNF462Q96JM2 2506 aa9.19□□□□□ -0.94
LIG1-221ENST00000613670 A0A096LPF7 62 aa9.19□□□□□ -0.94
LIG1-221ENST00000613670 MIR7-3HGQ8N6C7 128 aa9.19□□□□□ -0.94
LIG1-221ENST00000613670 DNAJC30Q96LL9 226 aa9.19□□□□□ -0.94
LIG1-221ENST00000613670 IGKV3D-7A0A0C4DH55 119 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 ATP5G1P05496 136 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 AMELXQ99217 191 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 COX7A2LO14548 114 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 RBMY1FQ15415 496 aaKnown RBP9.18□□□□□ -0.94
LIG1-221ENST00000613670 SPANXDQ9BXN6 97 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 SPANXCQ9NY87 97 aa9.18□□□□□ -0.94
LIG1-221ENST00000613670 TRAV13-2A0A0B4J235 113 aa9.17□□□□□ -0.94
LIG1-221ENST00000613670 TMEM86BQ8N661 226 aa9.17□□□□□ -0.94
LIG1-221ENST00000613670 K7EQD1 137 aa9.17□□□□□ -0.94
LIG1-221ENST00000613670 HERV-K104P63124 156 aa9.17□□□□□ -0.94
LIG1-221ENST00000613670 COX6A2Q02221 97 aa9.17□□□□□ -0.94
LIG1-221ENST00000613670 NDUFA1O15239 70 aa9.16□□□□□ -0.94
LIG1-221ENST00000613670 CHCHD7Q9BUK0 85 aa9.16□□□□□ -0.94
LIG1-221ENST00000613670 HTN3P15516 51 aa9.16□□□□□ -0.94
LIG1-221ENST00000613670 XCL1P47992 114 aa9.16□□□□□ -0.94
LIG1-221ENST00000613670 COL12A1Q99715 3063 aa9.15□□□□□ -0.94
LIG1-221ENST00000613670 CFAP161Q6P656 301 aa9.15□□□□□ -0.95
LIG1-221ENST00000613670 SBSPONQ8IVN8 264 aa9.15□□□□□ -0.95
LIG1-221ENST00000613670 LECT2O14960 151 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 ACYP1P07311 99 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 LINC00694P0DN24 101 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 C14orf132Q9NPU4 83 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 LINC00242Q5T6M2 205 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 Q96MF0 132 aa9.14□□□□□ -0.95
LIG1-221ENST00000613670 J3QLI3 93 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 MALP21145 153 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 COX7B2Q8TF08 81 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 TMEM89A2RUT3 159 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 TIRAPP58753 221 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 KLK9Q2XQG4 91 aa9.13□□□□□ -0.95
LIG1-221ENST00000613670 EIF4EBP3O60516 100 aaPredicted RBP9.12□□□□□ -0.95
LIG1-221ENST00000613670 PRB1P04280 392 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 CITED1Q99966 193 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 DEFB114Q30KQ6 69 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 LINC00643Q86TS7 51 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 CCL24O00175 119 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 SLPIP03973 132 aa9.12□□□□□ -0.95
LIG1-221ENST00000613670 S100A7L2Q5SY68 101 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 HIST2H2BCQ6DN03 193 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 LOC100131303A0A0U1RQF7 123 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 PF4P02776 101 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 MRPL23Q16540 153 aaKnown RBP9.11□□□□□ -0.95
LIG1-221ENST00000613670 SDIM1Q6ZPB5 146 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 ZNF702PQ9H963 129 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 RNF152Q8N8N0 203 aa9.11□□□□□ -0.95
LIG1-221ENST00000613670 OVOL2Q9BRP0 275 aa9.1□□□□□ -0.95
LIG1-221ENST00000613670 Q8N2B8 174 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms