RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TMEM191AQ9H0A3 160 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 ST20Q9HBF5 79 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 IGKV2-24A0A0C4DH68 120 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 TRBV27A0A0K0K1C4 114 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 CCL25O15444 150 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 MRPL52Q86TS9 123 aaKnown RBP4.79□□□□□ -1.64
CUX1-219ENST00000606749 STPG4Q8N801 248 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 C7orf33Q8WU49 177 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 MRAP2Q96G30 205 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 TMEM101Q96IK0 257 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 SMIM7Q9BQ49 75 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 EIF5A2Q9GZV4 153 aaKnown RBP4.79□□□□□ -1.64
CUX1-219ENST00000606749 OSTCQ9NRP0 149 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 CDC42SE2Q9NRR3 84 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 TMEM242Q9NWH2 141 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 FAT3Q8TDW7 4589 aa4.79□□□□□ -1.64
CUX1-219ENST00000606749 hCG_2014768A0A024R1R8 64 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 A0A096LNI7 61 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 IGHV1-58A0A0C4DH39 117 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 ZNF727A8MUV8 499 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 SRP19P09132 144 aaKnown RBP4.78□□□□□ -1.64
CUX1-219ENST00000606749 SS18Q15532 418 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 CD164L2Q6UWJ8 174 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 AMN1Q8IY45 258 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 ZNF664Q8N3J9 261 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 LINC00526Q96FQ7 95 aa4.78□□□□□ -1.64
CUX1-219ENST00000606749 C7orf77A4D0Y5 90 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 VCYO14598 125 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 RIGQ13278 110 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 NUP35Q8NFH5 326 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 LINC00474Q9P2X8 69 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 V9GYV3 84 aa4.77□□□□□ -1.65
CUX1-219ENST00000606749 SMKR1H3BMG3 65 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 ZNF561-AS1K7EIQ3 104 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 PPP1R17O96001 155 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 PRR3P79522 188 aaKnown RBP4.76□□□□□ -1.65
CUX1-219ENST00000606749 SYCNQ0VAF6 134 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 TMEM241Q24JQ0 296 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 NRACQ8N912 160 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 CARD19Q96LW7 228 aa4.76□□□□□ -1.65
CUX1-219ENST00000606749 CSDC2Q9Y534 153 aaKnown RBP4.76□□□□□ -1.65
CUX1-219ENST00000606749 C1orf196B1AJZ1 125 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 FCER1GP30273 86 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 SUMO2P61956 95 aaKnown RBP4.75□□□□□ -1.65
CUX1-219ENST00000606749 FAM104BQ5XKR9 115 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 ISOC2Q96AB3 205 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 LINC01600Q96MT4 127 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 PKIGQ9Y2B9 76 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 UBE2D4Q9Y2X8 147 aa4.75□□□□□ -1.65
CUX1-219ENST00000606749 IGLV4-69A0A075B6H9 119 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 SMIM27A0A1W2PRY6 76 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 C9JQL5 133 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 COX7A2LO14548 114 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 MALP21145 153 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 CAMPP49913 170 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 PTTG1IPP53801 180 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 RPL23P62829 140 aaKnown RBP4.74□□□□□ -1.65
CUX1-219ENST00000606749 SMAGPQ0VAQ4 97 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 SRSF9Q13242 221 aaKnown RBP eCLIP4.74□□□□□ -1.65
CUX1-219ENST00000606749 MRPL51Q4U2R6 128 aaKnown RBP4.74□□□□□ -1.65
CUX1-219ENST00000606749 FAM74A3Q4VXF1 159 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 RNASE13Q5GAN3 156 aaKnown RBP4.74□□□□□ -1.65
CUX1-219ENST00000606749 SPINK6Q6UWN8 80 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 KIR2DL4Q99706 377 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 NAT8BQ9UHF3 227 aa4.74□□□□□ -1.65
CUX1-219ENST00000606749 HMCN2Q8NDA2 5059 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 TRBV24-1A0A075B6N3 115 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 TRAV13-1A0A0B4J241 112 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 LOC107984640A0A0U1RRK4 108 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 LINC00862A6NCI5 91 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 PPP1R2P9O14990 202 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 GAGE2BQ13066 116 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 Q6ZRP5 223 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 C5orf38Q86SI9 138 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 C20orf78Q9BR46 151 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 TIMM21Q9BVV7 248 aa4.73□□□□□ -1.65
CUX1-219ENST00000606749 A0A0J9YXV3 536 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 A0A1W2PNN7 141 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 CKS2P33552 79 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 KRTAP10-8P60410 259 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 RPL32P62910 135 aaKnown RBP4.72□□□□□ -1.65
CUX1-219ENST00000606749 SRSF3P84103 164 aaKnown RBP4.72□□□□□ -1.65
CUX1-219ENST00000606749 ADIRFQ15847 76 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 FAM104AQ969W3 186 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 TMEM18Q96B42 140 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 C2orf48Q96LS8 159 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 NAT8Q9UHE5 227 aa4.72□□□□□ -1.65
CUX1-219ENST00000606749 A0A1B0GVG6 124 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 A0A1B0GW15 77 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.71□□□□□ -1.66
CUX1-219ENST00000606749 TCAPO15273 167 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 TNFRSF6BO95407 300 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 APOMO95445 188 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 RPL39P62891 51 aaKnown RBP4.71□□□□□ -1.66
CUX1-219ENST00000606749 ODF1Q14990 250 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 PEA15Q15121 130 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 REG3GQ6UW15 175 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 Q6ZUT4 128 aa4.71□□□□□ -1.66
CUX1-219ENST00000606749 IGHV3OR16-9A0A0B4J2B5 98 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms