RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TPPP3Q9BW30 176 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 TRAV1-1A0A0B4J248 108 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 SMLR1H3BR10 107 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 IFNA1P01562 189 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 XCL1P47992 114 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 S100A12P80511 92 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 RNASEKQ6P5S7 137 aaKnown RBP3.7□□□□□ -1.82
VRK3-220ENST00000600259 KRTAP11-1Q8IUC1 163 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 PRR26Q8N8Z3 221 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 NUP35Q8NFH5 326 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 NUDT10Q8NFP7 164 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 SMIM12Q96EX1 92 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 NUDT11Q96G61 164 aa3.7□□□□□ -1.82
VRK3-220ENST00000600259 IGLV4-69A0A075B6H9 119 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 TRBV6-5A0A0K0K1A5 114 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 LOC107984640A0A0U1RRK4 108 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 SDHAF1A6NFY7 115 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 KRTAP1-4P0C5Y4 121 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 ZNF25P17030 456 aaPredicted RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 MEF2BQ02080 365 aaPredicted RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 GAGE2BQ13066 116 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 ZNF345Q14585 488 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 C9orf116Q5BN46 136 aaPredicted RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 AMMECR1LQ6DCA0 310 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 CD164L2Q6UWJ8 174 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 PHF5AQ7RTV0 110 aaKnown RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 MRPL52Q86TS9 123 aaKnown RBP3.69□□□□□ -1.82
VRK3-220ENST00000600259 LINC00518Q8N0U6 118 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 ZNF664Q8N3J9 261 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 CDC42SE2Q9NRR3 84 aa3.69□□□□□ -1.82
VRK3-220ENST00000600259 XKRY2A2RUG3 117 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 SCO1O75880 301 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 TSHBP01222 138 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 APCSP02743 223 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 IGLV7-43P04211 117 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 BCL2P10415 239 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 CAMPP49913 170 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 POLR2KP53803 58 aaKnown RBP3.68□□□□□ -1.82
VRK3-220ENST00000600259 TWIST1Q15672 202 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 UQCC3Q6UW78 93 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 MANBALQ9NQG1 85 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 GNG13Q9P2W3 67 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 PKIGQ9Y2B9 76 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
VRK3-220ENST00000600259 I3L3M4 83 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 ZNF561-AS1K7EIQ3 104 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 K7EN84 100 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 MT-ND6P03923 174 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 PMCHP20382 165 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 GNG4P50150 75 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 SS18Q15532 418 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 C1orf137Q5JT78 98 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 XP32Q5T750 250 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 KRTAP7-1Q8IUC3 87 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 OCC1Q8TAD7 63 aa3.67□□□□□ -1.82
VRK3-220ENST00000600259 RNASE7Q9H1E1 156 aaKnown RBP3.67□□□□□ -1.82
VRK3-220ENST00000600259 TRBV27A0A0K0K1C4 114 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 H0Y9J4 135 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 TEX46H3BTG2 121 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 BCL2L11O43521 198 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 APOMO95445 188 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 RNF151Q2KHN1 245 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 DIRC1Q969H9 104 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 FAM104AQ969W3 186 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 TMEM101Q96IK0 257 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 BTF3L4Q96K17 158 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 C2orf48Q96LS8 159 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 OPRPNQ99935 248 aaPredicted RBP3.66□□□□□ -1.82
VRK3-220ENST00000600259 RPP21Q9H633 154 aaKnown RBP3.66□□□□□ -1.82
VRK3-220ENST00000600259 BIN3Q9NQY0 253 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 TMEM242Q9NWH2 141 aa3.66□□□□□ -1.82
VRK3-220ENST00000600259 IGLV1-50A0A075B6I6 118 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 C1orf196B1AJZ1 125 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 COX7A2LO14548 114 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 PDE6DO43924 150 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 EIF5AP63241 154 aaKnown RBP3.65□□□□□ -1.83
VRK3-220ENST00000600259 C10orf91Q5T1B1 145 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 C10orf25Q5T742 122 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 EIF5AL1Q6IS14 154 aaKnown RBP3.65□□□□□ -1.83
VRK3-220ENST00000600259 ISOC2Q96AB3 205 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 MRAP2Q96G30 205 aa3.65□□□□□ -1.83
VRK3-220ENST00000600259 CSDC2Q9Y534 153 aaKnown RBP3.65□□□□□ -1.83
VRK3-220ENST00000600259 KANTRA0A1W2PQU2 76 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 FAM168BA1KXE4 195 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 TLX1NBP0CAT3 122 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 RAB4AP20338 218 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 C5orf38Q86SI9 138 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 CAMK2N2Q96S95 79 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 ST20Q9HBF5 79 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 MRPL35Q9NZE8 188 aaKnown RBP3.64□□□□□ -1.83
VRK3-220ENST00000600259 CARHSP1Q9Y2V2 147 aaKnown RBP3.64□□□□□ -1.83
VRK3-220ENST00000600259 UBE2D4Q9Y2X8 147 aa3.64□□□□□ -1.83
VRK3-220ENST00000600259 A0A087WZ39 114 aa3.63□□□□□ -1.83
VRK3-220ENST00000600259 IGHV3OR16-9A0A0B4J2B5 98 aa3.63□□□□□ -1.83
VRK3-220ENST00000600259 C7orf77A4D0Y5 90 aa3.63□□□□□ -1.83
VRK3-220ENST00000600259 F8W036 122 aa3.63□□□□□ -1.83
VRK3-220ENST00000600259 H3BS24 57 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms