RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 C10orf91Q5T1B1 145 aa9.05□□□□□ -0.96
UPF1-205ENST00000598209 KRTAP17-1Q9BYP8 105 aa9.05□□□□□ -0.96
UPF1-205ENST00000598209 CARHSP1Q9Y2V2 147 aaKnown RBP9.05□□□□□ -0.96
UPF1-205ENST00000598209 GAGE12HA6NDE8 117 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 PRSS1P07477 247 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 SMAGPQ0VAQ4 97 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 LINC01620Q4KN68 170 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 DGAT2L7PQ6IED9 249 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 CHCHD10Q8WYQ3 142 aaPredicted RBP9.04□□□□□ -0.96
UPF1-205ENST00000598209 CDC42SE2Q9NRR3 84 aa9.04□□□□□ -0.96
UPF1-205ENST00000598209 TRAV9-1A0A075B6T8 112 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 ZNF664Q8N3J9 261 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 TMEM18Q96B42 140 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 FAM30AQ9NZY2 134 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 LAMTOR2Q9Y2Q5 125 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 UBE2D4Q9Y2X8 147 aa9.03□□□□□ -0.96
UPF1-205ENST00000598209 LINC00959A0A1B0GUT2 108 aa9.02□□□□□ -0.97
UPF1-205ENST00000598209 S100PP25815 95 aa9.02□□□□□ -0.97
UPF1-205ENST00000598209 CLRN3Q8NCR9 226 aa9.02□□□□□ -0.97
UPF1-205ENST00000598209 CSDC2Q9Y534 153 aaKnown RBP9.02□□□□□ -0.97
UPF1-205ENST00000598209 LOC389332A0A1B0GUA5 103 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 PRSS47A8MTI9 375 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 RPL39P62891 51 aaKnown RBP9.01□□□□□ -0.97
UPF1-205ENST00000598209 HAMPP81172 84 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 RHEBQ15382 184 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 Q8N1X5 172 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 TIMM21Q9BVV7 248 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 KRTAP4-5Q9BYR2 181 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 MAP1LC3AQ9H492 121 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 RPS10P5Q9NQ39 176 aa9.01□□□□□ -0.97
UPF1-205ENST00000598209 hDV102S1A0JD36 115 aa9□□□□□ -0.97
UPF1-205ENST00000598209 CCL25O15444 150 aa9□□□□□ -0.97
UPF1-205ENST00000598209 RAB5AP20339 215 aa9□□□□□ -0.97
UPF1-205ENST00000598209 XCL1P47992 114 aa9□□□□□ -0.97
UPF1-205ENST00000598209 SS18Q15532 418 aa9□□□□□ -0.97
UPF1-205ENST00000598209 RNASE13Q5GAN3 156 aaKnown RBP9□□□□□ -0.97
UPF1-205ENST00000598209 DNAH8Q96JB1 4490 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 FOXI1Q12951 378 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 CFAP161Q6P656 301 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 Q6ZSA8 131 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 Q6ZUT4 128 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 C15orf56Q8N910 161 aa8.99□□□□□ -0.97
UPF1-205ENST00000598209 APOC3P02656 99 aa8.98□□□□□ -0.97
UPF1-205ENST00000598209 KIAA1644Q3SXP7 199 aa8.98□□□□□ -0.97
UPF1-205ENST00000598209 Q8N8P6 123 aa8.98□□□□□ -0.97
UPF1-205ENST00000598209 AP5S1Q9NUS5 200 aa8.98□□□□□ -0.97
UPF1-205ENST00000598209 NDUFA5Q16718 116 aa8.97□□□□□ -0.97
UPF1-205ENST00000598209 C9orf163Q8N9P6 203 aa8.97□□□□□ -0.97
UPF1-205ENST00000598209 GNB1LQ9BYB4 327 aa8.97□□□□□ -0.97
UPF1-205ENST00000598209 SPANXA1Q9NS26 97 aa8.97□□□□□ -0.97
UPF1-205ENST00000598209 TRAV13-1A0A0B4J241 112 aa8.96□□□□□ -0.98
UPF1-205ENST00000598209 C1orf196B1AJZ1 125 aa8.96□□□□□ -0.98
UPF1-205ENST00000598209 SMR3BP02814 79 aaPredicted RBP8.96□□□□□ -0.98
UPF1-205ENST00000598209 CNBPP62633 177 aaKnown RBP8.96□□□□□ -0.98
UPF1-205ENST00000598209 HIGD2BQ4VC39 106 aa8.96□□□□□ -0.98
UPF1-205ENST00000598209 CD164L2Q6UWJ8 174 aa8.96□□□□□ -0.98
UPF1-205ENST00000598209 SNAPINO95295 136 aa8.95□□□□□ -0.98
UPF1-205ENST00000598209 SLPIP03973 132 aa8.95□□□□□ -0.98
UPF1-205ENST00000598209 MRPS36P82909 103 aaKnown RBP8.95□□□□□ -0.98
UPF1-205ENST00000598209 COX19Q49B96 90 aa8.95□□□□□ -0.98
UPF1-205ENST00000598209 SVBPQ8N300 66 aa8.95□□□□□ -0.98
UPF1-205ENST00000598209 FAM104AQ969W3 186 aa8.95□□□□□ -0.98
UPF1-205ENST00000598209 OPRPNQ99935 248 aaPredicted RBP8.95□□□□□ -0.98
UPF1-205ENST00000598209 NXT2Q9NPJ8 142 aaKnown RBP8.95□□□□□ -0.98
UPF1-205ENST00000598209 PCLOQ9Y6V0 5065 aa8.94□□□□□ -0.98
UPF1-205ENST00000598209 GVQW2A0A096LPI5 108 aaPredicted RBP8.94□□□□□ -0.98
UPF1-205ENST00000598209 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.94□□□□□ -0.98
UPF1-205ENST00000598209 EPM2AB3EWF7 344 aa8.94□□□□□ -0.98
UPF1-205ENST00000598209 IFI27P40305 119 aaPredicted RBP8.94□□□□□ -0.98
UPF1-205ENST00000598209 IGHV1-58A0A0C4DH39 117 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 K7EMI3 77 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 MT-ND6P03923 174 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 ORMDL2Q53FV1 153 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 SCXQ7RTU7 201 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 PYGO1Q9Y3Y4 419 aa8.93□□□□□ -0.98
UPF1-205ENST00000598209 TGIF2-C20orf24A0A0A6YYL0 155 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 COX7A2LO14548 114 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 Q5VSD8 79 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 C2orf66Q6UXQ4 117 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 CHAC1Q9BUX1 264 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 MRPL18Q9H0U6 180 aaKnown RBP8.92□□□□□ -0.98
UPF1-205ENST00000598209 CYSLTR1Q9Y271 337 aa8.92□□□□□ -0.98
UPF1-205ENST00000598209 IGLV4-3A0A075B6K6 122 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 IGHV3-64A0A075B6Q5 118 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 IFITM10A6NMD0 228 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 MALP21145 153 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 FABP9Q0Z7S8 132 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 SDIM1Q6ZPB5 146 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 TMEM141Q96I45 108 aa8.91□□□□□ -0.98
UPF1-205ENST00000598209 ALKBH7Q9BT30 221 aaPredicted RBP8.91□□□□□ -0.98
UPF1-205ENST00000598209 ABCA13Q86UQ4 5058 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 FAM229AH3BQW9 127 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 C5orf38Q86SI9 138 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 PRSS3P2Q8NHM4 247 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 CIRBP-AS1Q8TBR5 109 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 LINC00526Q96FQ7 95 aa8.9□□□□□ -0.98
UPF1-205ENST00000598209 ZNF561-AS1K7EIQ3 104 aa8.89□□□□□ -0.99
UPF1-205ENST00000598209 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.89□□□□□ -0.99
UPF1-205ENST00000598209 FAT1Q14517 4588 aa8.88□□□□□ -0.99
UPF1-205ENST00000598209 PANO1I0J062 215 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms