RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 GAGE12HA6NDE8 117 aa10.52□□□□□ -0.73
TRIM28-206ENST00000595974 D6R8Y8 96 aa10.52□□□□□ -0.73
TRIM28-206ENST00000595974 TCAPO15273 167 aa10.52□□□□□ -0.73
TRIM28-206ENST00000595974 PPBPP02775 128 aa10.52□□□□□ -0.73
TRIM28-206ENST00000595974 SMR3BP02814 79 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-206ENST00000595974 SMAGPQ0VAQ4 97 aa10.52□□□□□ -0.73
TRIM28-206ENST00000595974 CHCHD10Q8WYQ3 142 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-206ENST00000595974 VPS13BQ7Z7G8 4022 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 FAM229AH3BQW9 127 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 PHOX2AO14813 284 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 TNFRSF6BO95407 300 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 C9orf163Q8N9P6 203 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 SMIM2Q9BVW6 85 aa10.51□□□□□ -0.73
TRIM28-206ENST00000595974 hDV102S1A0JD36 115 aa10.5□□□□□ -0.73
TRIM28-206ENST00000595974 CNBPP62633 177 aaKnown RBP10.5□□□□□ -0.73
TRIM28-206ENST00000595974 CFAP161Q6P656 301 aa10.5□□□□□ -0.73
TRIM28-206ENST00000595974 TMEM18Q96B42 140 aa10.5□□□□□ -0.73
TRIM28-206ENST00000595974 CDC42SE2Q9NRR3 84 aa10.5□□□□□ -0.73
TRIM28-206ENST00000595974 AP5S1Q9NUS5 200 aa10.5□□□□□ -0.73
TRIM28-206ENST00000595974 CSDC2Q9Y534 153 aaKnown RBP10.5□□□□□ -0.73
TRIM28-206ENST00000595974 SCXQ7RTU7 201 aa10.49□□□□□ -0.73
TRIM28-206ENST00000595974 ORMDL3Q8N138 153 aa10.49□□□□□ -0.73
TRIM28-206ENST00000595974 CHAC1Q9BUX1 264 aa10.49□□□□□ -0.73
TRIM28-206ENST00000595974 LINC00959A0A1B0GUT2 108 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 TMEM218A2RU14 115 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 NPYP01303 97 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 ADCYAP1P18509 176 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 ZNF664Q8N3J9 261 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 C15orf56Q8N910 161 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 UBE2D4Q9Y2X8 147 aa10.48□□□□□ -0.73
TRIM28-206ENST00000595974 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-206ENST00000595974 FOXI1Q12951 378 aa10.47□□□□□ -0.73
TRIM28-206ENST00000595974 SS18Q15532 418 aa10.47□□□□□ -0.73
TRIM28-206ENST00000595974 TIMM21Q9BVV7 248 aa10.47□□□□□ -0.73
TRIM28-206ENST00000595974 CCL25O15444 150 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 XCL1P47992 114 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 TMEM136Q6ZRR5 245 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 PRELID3AQ96N28 172 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 IMMP2LQ96T52 175 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 LAMTOR2Q9Y2Q5 125 aa10.46□□□□□ -0.73
TRIM28-206ENST00000595974 SEC11CQ9BY50 192 aa10.45□□□□□ -0.74
TRIM28-206ENST00000595974 GVQW2A0A096LPI5 108 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-206ENST00000595974 INAFM2P0DMQ5 153 aa10.44□□□□□ -0.74
TRIM28-206ENST00000595974 COMMD7Q86VX2 200 aa10.44□□□□□ -0.74
TRIM28-206ENST00000595974 LINC00528Q8N1L1 170 aa10.44□□□□□ -0.74
TRIM28-206ENST00000595974 CIRBP-AS1Q8TBR5 109 aa10.44□□□□□ -0.74
TRIM28-206ENST00000595974 CTDSP1Q9GZU7 261 aa10.44□□□□□ -0.74
TRIM28-206ENST00000595974 IGHV3-64A0A075B6Q5 118 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 PLA2G1BP04054 148 aaKnown RBP10.43□□□□□ -0.74
TRIM28-206ENST00000595974 HIGD2BQ4VC39 106 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 CD164L2Q6UWJ8 174 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 SDIM1Q6ZPB5 146 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 Q6ZUT4 128 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 SPANXA1Q9NS26 97 aa10.43□□□□□ -0.74
TRIM28-206ENST00000595974 SRRM2Q9UQ35 2752 aaKnown RBP10.43□□□□□ -0.74
TRIM28-206ENST00000595974 IGHV1-58A0A0C4DH39 117 aa10.42□□□□□ -0.74
TRIM28-206ENST00000595974 PRSS47A8MTI9 375 aa10.42□□□□□ -0.74
TRIM28-206ENST00000595974 C1orf196B1AJZ1 125 aa10.42□□□□□ -0.74
TRIM28-206ENST00000595974 SLPIP03973 132 aa10.42□□□□□ -0.74
TRIM28-206ENST00000595974 RAB5AP20339 215 aa10.42□□□□□ -0.74
TRIM28-206ENST00000595974 RPL39P62891 51 aaKnown RBP10.42□□□□□ -0.74
TRIM28-206ENST00000595974 FLG2Q5D862 2391 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-206ENST00000595974 TRAV9-1A0A075B6T8 112 aa10.41□□□□□ -0.74
TRIM28-206ENST00000595974 RNASE13Q5GAN3 156 aaKnown RBP10.41□□□□□ -0.74
TRIM28-206ENST00000595974 MAP1LC3AQ9H492 121 aa10.41□□□□□ -0.74
TRIM28-206ENST00000595974 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-206ENST00000595974 TRAV13-1A0A0B4J241 112 aa10.39□□□□□ -0.75
TRIM28-206ENST00000595974 MRPS36P82909 103 aaKnown RBP10.39□□□□□ -0.75
TRIM28-206ENST00000595974 CIRBPQ14011 172 aaKnown RBP10.39□□□□□ -0.75
TRIM28-206ENST00000595974 COX7A2LO14548 114 aa10.38□□□□□ -0.75
TRIM28-206ENST00000595974 LOC389332A0A1B0GUA5 103 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 PANO1I0J062 215 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 S100PP25815 95 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 IFI27P40305 119 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-206ENST00000595974 C10orf91Q5T1B1 145 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 Q8N8P6 123 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 FAM104AQ969W3 186 aa10.37□□□□□ -0.75
TRIM28-206ENST00000595974 CARHSP1Q9Y2V2 147 aaKnown RBP10.37□□□□□ -0.75
TRIM28-206ENST00000595974 MALP21145 153 aa10.36□□□□□ -0.75
TRIM28-206ENST00000595974 PKIGQ9Y2B9 76 aa10.36□□□□□ -0.75
TRIM28-206ENST00000595974 PYGO1Q9Y3Y4 419 aa10.36□□□□□ -0.75
TRIM28-206ENST00000595974 MYCBP2O75592 4640 aa10.35□□□□□ -0.75
TRIM28-206ENST00000595974 ZNF561-AS1K7EIQ3 104 aa10.35□□□□□ -0.75
TRIM28-206ENST00000595974 K7EMI3 77 aa10.35□□□□□ -0.75
TRIM28-206ENST00000595974 RHEBQ15382 184 aa10.35□□□□□ -0.75
TRIM28-206ENST00000595974 SPACA4Q8TDM5 124 aa10.35□□□□□ -0.75
TRIM28-206ENST00000595974 NXT2Q9NPJ8 142 aaKnown RBP10.35□□□□□ -0.75
TRIM28-206ENST00000595974 IFITM10A6NMD0 228 aa10.34□□□□□ -0.75
TRIM28-206ENST00000595974 ORMDL2Q53FV1 153 aa10.34□□□□□ -0.75
TRIM28-206ENST00000595974 CARD19Q96LW7 228 aa10.34□□□□□ -0.75
TRIM28-206ENST00000595974 OPRPNQ99935 248 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-206ENST00000595974 CYSLTR1Q9Y271 337 aa10.34□□□□□ -0.75
TRIM28-206ENST00000595974 DMBT1Q9UGM3 2413 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-206ENST00000595974 APOMO95445 188 aa10.33□□□□□ -0.76
TRIM28-206ENST00000595974 CHTF8P0CG12 524 aa10.33□□□□□ -0.76
TRIM28-206ENST00000595974 COX6A2Q02221 97 aa10.33□□□□□ -0.76
TRIM28-206ENST00000595974 IGLV4-3A0A075B6K6 122 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 KRTAP10-4P60372 401 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-206ENST00000595974 SYCNQ0VAF6 134 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 COX19Q49B96 90 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms