RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 C20orf78Q9BR46 151 aa11.51□□□□□ -0.57
SHKBP1-204ENST00000594862 IGKV3OR2-268A0A0C4DH90 116 aa11.5□□□□□ -0.57
SHKBP1-204ENST00000594862 GAGE12HA6NDE8 117 aa11.5□□□□□ -0.57
SHKBP1-204ENST00000594862 MRPL51Q4U2R6 128 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-204ENST00000594862 CHCHD10Q8WYQ3 142 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-204ENST00000594862 SMKR1H3BMG3 65 aa11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 PPBPP02775 128 aa11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 CKS2P33552 79 aa11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 RPL32P62910 135 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 LINC00528Q8N1L1 170 aa11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 TMEM18Q96B42 140 aa11.49□□□□□ -0.57
SHKBP1-204ENST00000594862 TRBV24-1A0A075B6N3 115 aa11.48□□□□□ -0.57
SHKBP1-204ENST00000594862 A0A1B0GXF2 115 aa11.48□□□□□ -0.57
SHKBP1-204ENST00000594862 CLLU1Q5K131 121 aa11.48□□□□□ -0.57
SHKBP1-204ENST00000594862 MRPL54Q6P161 138 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-204ENST00000594862 PHOX2AO14813 284 aa11.47□□□□□ -0.57
SHKBP1-204ENST00000594862 MT-ND4LP03901 98 aa11.47□□□□□ -0.57
SHKBP1-204ENST00000594862 SS18Q15532 418 aa11.47□□□□□ -0.57
SHKBP1-204ENST00000594862 ANAPC16Q96DE5 110 aa11.47□□□□□ -0.57
SHKBP1-204ENST00000594862 CSDC2Q9Y534 153 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-204ENST00000594862 CCL25O15444 150 aa11.46□□□□□ -0.57
SHKBP1-204ENST00000594862 CIRBP-AS1Q8TBR5 109 aa11.46□□□□□ -0.57
SHKBP1-204ENST00000594862 CDC42SE2Q9NRR3 84 aa11.46□□□□□ -0.57
SHKBP1-204ENST00000594862 FAT1Q14517 4588 aa11.46□□□□□ -0.58
SHKBP1-204ENST00000594862 IGHV3-64A0A075B6Q5 118 aa11.45□□□□□ -0.58
SHKBP1-204ENST00000594862 LINC00959A0A1B0GUT2 108 aa11.45□□□□□ -0.58
SHKBP1-204ENST00000594862 ZNF664Q8N3J9 261 aa11.45□□□□□ -0.58
SHKBP1-204ENST00000594862 C15orf56Q8N910 161 aa11.45□□□□□ -0.58
SHKBP1-204ENST00000594862 D6R8Y8 96 aa11.44□□□□□ -0.58
SHKBP1-204ENST00000594862 TNFRSF6BO95407 300 aa11.44□□□□□ -0.58
SHKBP1-204ENST00000594862 TIMM21Q9BVV7 248 aa11.44□□□□□ -0.58
SHKBP1-204ENST00000594862 SMIM2Q9BVW6 85 aa11.44□□□□□ -0.58
SHKBP1-204ENST00000594862 PKIGQ9Y2B9 76 aa11.44□□□□□ -0.58
SHKBP1-204ENST00000594862 GVQW2A0A096LPI5 108 aaPredicted RBP11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 XCL1P47992 114 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 FOXI1Q12951 378 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 UQCC3Q6UW78 93 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 SDIM1Q6ZPB5 146 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 ORMDL3Q8N138 153 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 UBE2D4Q9Y2X8 147 aa11.43□□□□□ -0.58
SHKBP1-204ENST00000594862 FLG2Q5D862 2391 aaPredicted RBP11.42□□□□□ -0.58
SHKBP1-204ENST00000594862 VPS13BQ7Z7G8 4022 aa11.42□□□□□ -0.58
SHKBP1-204ENST00000594862 CD164L2Q6UWJ8 174 aa11.42□□□□□ -0.58
SHKBP1-204ENST00000594862 DNAH8Q96JB1 4490 aa11.41□□□□□ -0.58
SHKBP1-204ENST00000594862 IGHV1-58A0A0C4DH39 117 aa11.41□□□□□ -0.58
SHKBP1-204ENST00000594862 C1orf196B1AJZ1 125 aa11.41□□□□□ -0.58
SHKBP1-204ENST00000594862 LAMTOR2Q9Y2Q5 125 aa11.41□□□□□ -0.58
SHKBP1-204ENST00000594862 MYCBP2O75592 4640 aa11.4□□□□□ -0.58
SHKBP1-204ENST00000594862 SRRM2Q9UQ35 2752 aaKnown RBP11.4□□□□□ -0.58
SHKBP1-204ENST00000594862 NPYP01303 97 aa11.39□□□□□ -0.59
SHKBP1-204ENST00000594862 CIRBPQ14011 172 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-204ENST00000594862 HIGD2BQ4VC39 106 aa11.39□□□□□ -0.59
SHKBP1-204ENST00000594862 TMEM136Q6ZRR5 245 aa11.39□□□□□ -0.59
SHKBP1-204ENST00000594862 SPANXA1Q9NS26 97 aa11.39□□□□□ -0.59
SHKBP1-204ENST00000594862 RAB5AP20339 215 aa11.38□□□□□ -0.59
SHKBP1-204ENST00000594862 PRELID3AQ96N28 172 aa11.38□□□□□ -0.59
SHKBP1-204ENST00000594862 IMMP2LQ96T52 175 aa11.38□□□□□ -0.59
SHKBP1-204ENST00000594862 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.38□□□□□ -0.59
SHKBP1-204ENST00000594862 SLPIP03973 132 aa11.37□□□□□ -0.59
SHKBP1-204ENST00000594862 COX7A2LO14548 114 aa11.36□□□□□ -0.59
SHKBP1-204ENST00000594862 MALP21145 153 aa11.36□□□□□ -0.59
SHKBP1-204ENST00000594862 ZNF561-AS1K7EIQ3 104 aa11.35□□□□□ -0.59
SHKBP1-204ENST00000594862 MRPS36P82909 103 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-204ENST00000594862 Q6ZUT4 128 aa11.35□□□□□ -0.59
SHKBP1-204ENST00000594862 CTDSP1Q9GZU7 261 aa11.35□□□□□ -0.59
SHKBP1-204ENST00000594862 MAP1LC3AQ9H492 121 aa11.35□□□□□ -0.59
SHKBP1-204ENST00000594862 TRAV13-1A0A0B4J241 112 aa11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 PRSS47A8MTI9 375 aa11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 APOMO95445 188 aa11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 RPL37AP61513 92 aaKnown RBP11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 SPACA4Q8TDM5 124 aa11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 DPH3Q96FX2 82 aa11.34□□□□□ -0.59
SHKBP1-204ENST00000594862 TRAV9-1A0A075B6T8 112 aa11.33□□□□□ -0.6
SHKBP1-204ENST00000594862 TMEM218A2RU14 115 aa11.33□□□□□ -0.6
SHKBP1-204ENST00000594862 IFI27P40305 119 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-204ENST00000594862 CARD19Q96LW7 228 aa11.33□□□□□ -0.6
SHKBP1-204ENST00000594862 LINC00474Q9P2X8 69 aa11.33□□□□□ -0.6
SHKBP1-204ENST00000594862 K7EMI3 77 aa11.32□□□□□ -0.6
SHKBP1-204ENST00000594862 RPL39P62891 51 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-204ENST00000594862 IFITM2Q01629 132 aa11.32□□□□□ -0.6
SHKBP1-204ENST00000594862 PANO1I0J062 215 aa11.31□□□□□ -0.6
SHKBP1-204ENST00000594862 COX6A2Q02221 97 aa11.31□□□□□ -0.6
SHKBP1-204ENST00000594862 RNASE13Q5GAN3 156 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-204ENST00000594862 SEC11CQ9BY50 192 aa11.31□□□□□ -0.6
SHKBP1-204ENST00000594862 PYGO1Q9Y3Y4 419 aa11.31□□□□□ -0.6
SHKBP1-204ENST00000594862 KRTAP10-4P60372 401 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-204ENST00000594862 SYCNQ0VAF6 134 aa11.3□□□□□ -0.6
SHKBP1-204ENST00000594862 A0A087WYN8 130 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 IFITM10A6NMD0 228 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 CHTF8P0CG12 524 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 ADCYAP1P18509 176 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 S100PP25815 95 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 ORMDL2Q53FV1 153 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 Q8N8P6 123 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 PLAC8Q9NZF1 115 aa11.29□□□□□ -0.6
SHKBP1-204ENST00000594862 G0S2P27469 103 aa11.28□□□□□ -0.6
SHKBP1-204ENST00000594862 OR10D4PQ8NGN7 298 aa11.28□□□□□ -0.6
SHKBP1-204ENST00000594862 PRSS3P2Q8NHM4 247 aa11.28□□□□□ -0.6
SHKBP1-204ENST00000594862 C2orf48Q96LS8 159 aa11.28□□□□□ -0.6
SHKBP1-204ENST00000594862 NXT2Q9NPJ8 142 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms