RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 KIAA1109Q2LD37 5005 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 DNAH11Q96DT5 4516 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 A0A1B0GXF2 115 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 PHOX2AO14813 284 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 HAMPP81172 84 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 MRPL52Q86TS9 123 aaKnown RBP7.11□□□□□ -1.27
CLIP3-203ENST00000586457 COMMD7Q86VX2 200 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 CTDSP1Q9GZU7 261 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 CDC42SE2Q9NRR3 84 aa7.11□□□□□ -1.27
CLIP3-203ENST00000586457 LINC00959A0A1B0GUT2 108 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 C1orf196B1AJZ1 125 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 CCL25O15444 150 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 MALP21145 153 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 IFITM2Q01629 132 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 Q5VSD8 79 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 IMMP2LQ96T52 175 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 SMIM2Q9BVW6 85 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 MAP1LC3AQ9H492 121 aa7.1□□□□□ -1.27
CLIP3-203ENST00000586457 IGHV3-64A0A075B6Q5 118 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 LOC389332A0A1B0GUA5 103 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 NPYP01303 97 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 PLA2G1BP04054 148 aaKnown RBP7.09□□□□□ -1.27
CLIP3-203ENST00000586457 RPL32P62910 135 aaKnown RBP7.09□□□□□ -1.27
CLIP3-203ENST00000586457 KRTAP26-1Q6PEX3 210 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 SEC11CQ9BY50 192 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 FAM30AQ9NZY2 134 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 LAMTOR2Q9Y2Q5 125 aa7.09□□□□□ -1.27
CLIP3-203ENST00000586457 CSDC2Q9Y534 153 aaKnown RBP7.09□□□□□ -1.27
CLIP3-203ENST00000586457 ZNF561-AS1K7EIQ3 104 aa7.08□□□□□ -1.28
CLIP3-203ENST00000586457 C9orf163Q8N9P6 203 aa7.08□□□□□ -1.28
CLIP3-203ENST00000586457 CHAC1Q9BUX1 264 aa7.08□□□□□ -1.28
CLIP3-203ENST00000586457 DYNC1H1Q14204 4646 aaKnown RBP7.07□□□□□ -1.28
CLIP3-203ENST00000586457 TRAV13-1A0A0B4J241 112 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 INAFM2P0DMQ5 153 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 G0S2P27469 103 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 IFI27P40305 119 aaPredicted RBP7.07□□□□□ -1.28
CLIP3-203ENST00000586457 CNBPP62633 177 aaKnown RBP7.07□□□□□ -1.28
CLIP3-203ENST00000586457 HIGD2BQ4VC39 106 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 CD164L2Q6UWJ8 174 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 TIMM21Q9BVV7 248 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 KRTAP4-5Q9BYR2 181 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 SPANXA1Q9NS26 97 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 UBE2D4Q9Y2X8 147 aa7.07□□□□□ -1.28
CLIP3-203ENST00000586457 HERC2O95714 4834 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 TRAV9-1A0A075B6T8 112 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 IGHV1-58A0A0C4DH39 117 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 COX7A2LO14548 114 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 NDUFA5Q16718 116 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 RNASE13Q5GAN3 156 aaKnown RBP7.06□□□□□ -1.28
CLIP3-203ENST00000586457 Q6ZSA8 131 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 RPS10P5Q9NQ39 176 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 PKIGQ9Y2B9 76 aa7.06□□□□□ -1.28
CLIP3-203ENST00000586457 APOMO95445 188 aa7.05□□□□□ -1.28
CLIP3-203ENST00000586457 RPL39P62891 51 aaKnown RBP7.05□□□□□ -1.28
CLIP3-203ENST00000586457 FOXI1Q12951 378 aa7.05□□□□□ -1.28
CLIP3-203ENST00000586457 SCXQ7RTU7 201 aa7.05□□□□□ -1.28
CLIP3-203ENST00000586457 LINC00528Q8N1L1 170 aa7.05□□□□□ -1.28
CLIP3-203ENST00000586457 IFITM10A6NMD0 228 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 ADCYAP1P18509 176 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 COX19Q49B96 90 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 ORMDL2Q53FV1 153 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 Q6ZN92 141 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 Q8N8P6 123 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 CIRBP-AS1Q8TBR5 109 aa7.04□□□□□ -1.28
CLIP3-203ENST00000586457 NXT2Q9NPJ8 142 aaKnown RBP7.04□□□□□ -1.28
CLIP3-203ENST00000586457 GVQW2A0A096LPI5 108 aaPredicted RBP7.03□□□□□ -1.28
CLIP3-203ENST00000586457 K7EMI3 77 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 RHEBQ15382 184 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 SDIM1Q6ZPB5 146 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 Q6ZUT4 128 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 C15orf56Q8N910 161 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 PRSS3P2Q8NHM4 247 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 C2orf88Q9BSF0 95 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 KRTAP17-1Q9BYP8 105 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 CYSLTR1Q9Y271 337 aa7.03□□□□□ -1.28
CLIP3-203ENST00000586457 LRP1BQ9NZR2 4599 aa7.02□□□□□ -1.29
CLIP3-203ENST00000586457 PRSS47A8MTI9 375 aa7.02□□□□□ -1.29
CLIP3-203ENST00000586457 MRPS36P82909 103 aaKnown RBP7.02□□□□□ -1.29
CLIP3-203ENST00000586457 PAPPA-AS1Q5QFB9 102 aa7.02□□□□□ -1.29
CLIP3-203ENST00000586457 C5orf38Q86SI9 138 aa7.02□□□□□ -1.29
CLIP3-203ENST00000586457 TGIF2-C20orf24A0A0A6YYL0 155 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 APOC3P02656 99 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 COX6A2Q02221 97 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 SYCNQ0VAF6 134 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 FABP9Q0Z7S8 132 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 KIAA1644Q3SXP7 199 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 TEX43Q6ZNM6 134 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 TMEM141Q96I45 108 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 CARD19Q96LW7 228 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 OPRPNQ99935 248 aaPredicted RBP7.01□□□□□ -1.29
CLIP3-203ENST00000586457 GNB1LQ9BYB4 327 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 VCX2Q9H322 139 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 PYGO1Q9Y3Y4 419 aa7.01□□□□□ -1.29
CLIP3-203ENST00000586457 IGKV2-24A0A0C4DH68 120 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 SNAPINO95295 136 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 MT-ND6P03923 174 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 SLPIP03973 132 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 MAJINQ3KP22 176 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 C2orf66Q6UXQ4 117 aa7□□□□□ -1.29
CLIP3-203ENST00000586457 SVBPQ8N300 66 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms