RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 IGLV7-43P04211 117 aa6.03□□□□□ -1.44
RFFL-208ENST00000581039 CTRLP40313 264 aa6.03□□□□□ -1.44
RFFL-208ENST00000581039 PHF5AQ7RTV0 110 aaKnown RBP6.03□□□□□ -1.44
RFFL-208ENST00000581039 NUP35Q8NFH5 326 aa6.03□□□□□ -1.44
RFFL-208ENST00000581039 CAMK2N2Q96S95 79 aa6.03□□□□□ -1.44
RFFL-208ENST00000581039 RPL18AQ02543 176 aaKnown RBP6.02□□□□□ -1.45
RFFL-208ENST00000581039 NUDT10Q8NFP7 164 aa6.02□□□□□ -1.45
RFFL-208ENST00000581039 MRAP2Q96G30 205 aa6.02□□□□□ -1.45
RFFL-208ENST00000581039 NUDT11Q96G61 164 aa6.02□□□□□ -1.45
RFFL-208ENST00000581039 CNFNQ9BYD5 112 aa6.02□□□□□ -1.45
RFFL-208ENST00000581039 CDC42SE2Q9NRR3 84 aa6.02□□□□□ -1.45
RFFL-208ENST00000581039 IGLV1-50A0A075B6I6 118 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 A0A087WZ39 114 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 KRTAP9-6A0A140TA67 174 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 C1orf196B1AJZ1 125 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 H0Y9J4 135 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.01□□□□□ -1.45
RFFL-208ENST00000581039 COX7A2LO14548 114 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 ESDP10768 282 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 FOXA3P55318 350 aaPredicted RBP6.01□□□□□ -1.45
RFFL-208ENST00000581039 MEF2BQ02080 365 aaPredicted RBP6.01□□□□□ -1.45
RFFL-208ENST00000581039 MED9Q9NWA0 146 aa6.01□□□□□ -1.45
RFFL-208ENST00000581039 BCL2L11O43521 198 aa6□□□□□ -1.45
RFFL-208ENST00000581039 PDE6DO43924 150 aa6□□□□□ -1.45
RFFL-208ENST00000581039 TSHBP01222 138 aa6□□□□□ -1.45
RFFL-208ENST00000581039 ZNF345Q14585 488 aa6□□□□□ -1.45
RFFL-208ENST00000581039 MRPL52Q86TS9 123 aaKnown RBP6□□□□□ -1.45
RFFL-208ENST00000581039 TSKUQ8WUA8 353 aa6□□□□□ -1.45
RFFL-208ENST00000581039 C2orf48Q96LS8 159 aa6□□□□□ -1.45
RFFL-208ENST00000581039 FAM210AQ96ND0 272 aa6□□□□□ -1.45
RFFL-208ENST00000581039 OPRPNQ99935 248 aaPredicted RBP6□□□□□ -1.45
RFFL-208ENST00000581039 RPP21Q9H633 154 aaKnown RBP6□□□□□ -1.45
RFFL-208ENST00000581039 ST20Q9HBF5 79 aa6□□□□□ -1.45
RFFL-208ENST00000581039 FAT4Q6V0I7 4981 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 TRBV20OR9-2A0A075B6H5 130 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 TRAV1-1A0A0B4J248 108 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 TRBV6-5A0A0K0K1A5 114 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 KANTRA0A1W2PQU2 76 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 SMLR1H3BR10 107 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 TEX46H3BTG2 121 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 UBE2D1P51668 147 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 TMEM242Q9NWH2 141 aa5.99□□□□□ -1.45
RFFL-208ENST00000581039 RNF151Q2KHN1 245 aa5.98□□□□□ -1.45
RFFL-208ENST00000581039 RNASE7Q9H1E1 156 aaKnown RBP5.98□□□□□ -1.45
RFFL-208ENST00000581039 TRAV13-1A0A0B4J241 112 aa5.97□□□□□ -1.45
RFFL-208ENST00000581039 C7orf77A4D0Y5 90 aa5.97□□□□□ -1.45
RFFL-208ENST00000581039 RPL13AP40429 203 aaKnown RBP5.97□□□□□ -1.45
RFFL-208ENST00000581039 SMAGPQ0VAQ4 97 aa5.97□□□□□ -1.45
RFFL-208ENST00000581039 C5orf38Q86SI9 138 aa5.97□□□□□ -1.45
RFFL-208ENST00000581039 IMMP2LQ96T52 175 aa5.97□□□□□ -1.45
RFFL-208ENST00000581039 HMSDA8MTL9 139 aa5.96□□□□□ -1.46
RFFL-208ENST00000581039 KRTAP1-4P0C5Y4 121 aa5.96□□□□□ -1.46
RFFL-208ENST00000581039 POLR2KP53803 58 aaKnown RBP5.96□□□□□ -1.46
RFFL-208ENST00000581039 SPAG11BQ08648 103 aa5.96□□□□□ -1.46
RFFL-208ENST00000581039 OCC1Q8TAD7 63 aa5.96□□□□□ -1.46
RFFL-208ENST00000581039 TRBV27A0A0K0K1C4 114 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 FAM168BA1KXE4 195 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 K7EN84 100 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 VCYO14598 125 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 FCER1GP30273 86 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 RNASE13Q5GAN3 156 aaKnown RBP5.95□□□□□ -1.46
RFFL-208ENST00000581039 KRTAP11-1Q8IUC1 163 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 BORCS7Q96B45 105 aa5.95□□□□□ -1.46
RFFL-208ENST00000581039 MRPL35Q9NZE8 188 aaKnown RBP5.95□□□□□ -1.46
RFFL-208ENST00000581039 CSDC2Q9Y534 153 aaKnown RBP5.95□□□□□ -1.46
RFFL-208ENST00000581039 A8MWL6 223 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 F8WDY8 70 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 GATCO43716 136 aaKnown RBP5.94□□□□□ -1.46
RFFL-208ENST00000581039 UBE2BP63146 152 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 TMEM241Q24JQ0 296 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
RFFL-208ENST00000581039 FAM19A5Q7Z5A7 132 aaPredicted RBP5.94□□□□□ -1.46
RFFL-208ENST00000581039 OR10D4PQ8NGN7 298 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 CARHSP1Q9Y2V2 147 aaKnown RBP5.94□□□□□ -1.46
RFFL-208ENST00000581039 UBE2D4Q9Y2X8 147 aa5.94□□□□□ -1.46
RFFL-208ENST00000581039 NDUFA1O15239 70 aa5.93□□□□□ -1.46
RFFL-208ENST00000581039 TSPAN13O95857 204 aa5.93□□□□□ -1.46
RFFL-208ENST00000581039 GAGE2EQ4V326 116 aa5.93□□□□□ -1.46
RFFL-208ENST00000581039 ORAOV1Q8WV07 137 aa5.93□□□□□ -1.46
RFFL-208ENST00000581039 GAGE2DQ9UEU5 116 aa5.93□□□□□ -1.46
RFFL-208ENST00000581039 TLX1NBP0CAT3 122 aa5.92□□□□□ -1.46
RFFL-208ENST00000581039 RAB4AP20338 218 aa5.92□□□□□ -1.46
RFFL-208ENST00000581039 TAGLN2P37802 199 aaKnown RBP5.92□□□□□ -1.46
RFFL-208ENST00000581039 TMEM18Q96B42 140 aa5.92□□□□□ -1.46
RFFL-208ENST00000581039 KIR2DL4Q99706 377 aa5.92□□□□□ -1.46
RFFL-208ENST00000581039 TMEM191AQ9H0A3 160 aa5.92□□□□□ -1.46
RFFL-208ENST00000581039 M0QXV9 152 aa5.91□□□□□ -1.46
RFFL-208ENST00000581039 PPP1R17O96001 155 aa5.91□□□□□ -1.46
RFFL-208ENST00000581039 C10orf25Q5T742 122 aa5.91□□□□□ -1.46
RFFL-208ENST00000581039 UNQ6190/PRO20217Q6UXQ8 127 aa5.91□□□□□ -1.46
RFFL-208ENST00000581039 A0A1B0GUT8 65 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 RGS21Q2M5E4 152 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 Q6ZUT4 128 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 FAM231DQ6ZW35 169 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 AMN1Q8IY45 258 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 TIMM21Q9BVV7 248 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 SMDT1Q9H4I9 107 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 C6orf48Q9UBA6 75 aa5.9□□□□□ -1.46
RFFL-208ENST00000581039 IGHV3OR16-9A0A0B4J2B5 98 aa5.89□□□□□ -1.47
RFFL-208ENST00000581039 SMKR1H3BMG3 65 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms