RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ODF1Q14990 250 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 DEFB104AQ8WTQ1 72 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 DKK2Q9UBU2 259 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 CHTOPQ9Y3Y2 248 aaKnown RBP7.13□□□□□ -1.27
SS18-207ENST00000577636 ATP5G1P05496 136 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 PMVKQ15126 192 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 DGAT2L7PQ6IED9 249 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 Q6ZTC4 211 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 Q8NAQ8 132 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 BAALCQ8WXS3 180 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 SPANXA1Q9NS26 97 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 UQCR10Q9UDW1 63 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 PRO0255Q9UI72 69 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 DNAH6Q9C0G6 4158 aa7.12□□□□□ -1.27
SS18-207ENST00000577636 TRAV10A0A0B4J240 114 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 IGHV3-38A0A0C4DH36 116 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 IGIPA6NJ69 53 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 F8VRH5 84 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 UBE2L6O14933 153 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 RTL8CO15255 209 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 CRYBA4P53673 196 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 UBE2D3P61077 147 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 UBE2D2P62837 147 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 RPL39P62891 51 aaKnown RBP7.11□□□□□ -1.27
SS18-207ENST00000577636 MIEN1Q9BRT3 115 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 GTSF1LQ9H1H1 148 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 VCX2Q9H322 139 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 PYGO1Q9Y3Y4 419 aa7.11□□□□□ -1.27
SS18-207ENST00000577636 hDV102S1A0JD36 115 aa7.1□□□□□ -1.27
SS18-207ENST00000577636 PAX4O43316 350 aa7.1□□□□□ -1.27
SS18-207ENST00000577636 TMEM101Q96IK0 257 aa7.1□□□□□ -1.27
SS18-207ENST00000577636 MRPL35Q9NZE8 188 aaKnown RBP7.1□□□□□ -1.27
SS18-207ENST00000577636 TRBV25-1A0A075B6N4 114 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 DEFB131BA0A096LNP1 70 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 H7C423 109 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 GYPEP15421 78 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 MAJINQ3KP22 176 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 AMMECR1LQ6DCA0 310 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 SLC25A34Q6PIV7 304 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 C2orf88Q9BSF0 95 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 TMEM243Q9BU79 118 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 TIMM21Q9BVV7 248 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 CST9LQ9H4G1 147 aa7.09□□□□□ -1.27
SS18-207ENST00000577636 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.08□□□□□ -1.28
SS18-207ENST00000577636 IGKV2-29A2NJV5 120 aaPredicted RBP7.08□□□□□ -1.28
SS18-207ENST00000577636 F5H768 121 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 IGLC3P0DOY3 106 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 HNRNPA3P51991 378 aaKnown RBP7.08□□□□□ -1.28
SS18-207ENST00000577636 HERVK_113P61574 105 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 SH2D6Q7Z4S9 175 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 UBE2DNLQ8IWF7 75 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 ATP6V0E2Q8NHE4 81 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 CHCHD7Q9BUK0 85 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 Q9UF83 564 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 DNAH2Q9P225 4427 aa7.08□□□□□ -1.28
SS18-207ENST00000577636 HTN3P15516 51 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 STPG4Q8N801 248 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 OR5A1Q8NGJ0 315 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 C14orf144Q96I85 54 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 CELA1Q9UNI1 258 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 UBE2D4Q9Y2X8 147 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 PKHD1P08F94 4074 aa7.07□□□□□ -1.28
SS18-207ENST00000577636 FAT2Q9NYQ8 4349 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 IGLV4-3A0A075B6K6 122 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 TRBV6-8A0A0A6YYG3 113 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 LOC100131303A0A0U1RQF7 123 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 LINC00587B1AMM8 73 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 NMUP48645 174 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 MRPS36P82909 103 aaKnown RBP7.06□□□□□ -1.28
SS18-207ENST00000577636 C12orf74Q32Q52 190 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 ZC2HC1BQ5TFG8 222 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 CHCHD5Q9BSY4 110 aa7.06□□□□□ -1.28
SS18-207ENST00000577636 TRAV26-1A0A087WT03 109 aa7.05□□□□□ -1.28
SS18-207ENST00000577636 FGF6P10767 208 aa7.05□□□□□ -1.28
SS18-207ENST00000577636 ZNF25P17030 456 aaPredicted RBP7.05□□□□□ -1.28
SS18-207ENST00000577636 MRPL23Q16540 153 aaKnown RBP7.05□□□□□ -1.28
SS18-207ENST00000577636 MRPL52Q86TS9 123 aaKnown RBP7.05□□□□□ -1.28
SS18-207ENST00000577636 CSDC2Q9Y534 153 aaKnown RBP7.05□□□□□ -1.28
SS18-207ENST00000577636 ICOSQ9Y6W8 199 aa7.05□□□□□ -1.28
SS18-207ENST00000577636 ABCA13Q86UQ4 5058 aa7.05□□□□□ -1.28
SS18-207ENST00000577636 DNAH17Q9UFH2 4485 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 A0A0J9YY99 117 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 LINC00694P0DN24 101 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 COX8AP10176 69 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 SEC11AP67812 179 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 ANKRD39Q53RE8 183 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 TMEM170BQ5T4T1 132 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 NTM-AS1Q6ZSK4 140 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 OPRPNQ99935 248 aaPredicted RBP7.04□□□□□ -1.28
SS18-207ENST00000577636 CHAC1Q9BUX1 264 aa7.04□□□□□ -1.28
SS18-207ENST00000577636 DYNC1H1Q14204 4646 aaKnown RBP7.04□□□□□ -1.28
SS18-207ENST00000577636 C11orf86A6NJI1 115 aa7.03□□□□□ -1.28
SS18-207ENST00000577636 C16orf90A8MZG2 172 aa7.03□□□□□ -1.28
SS18-207ENST00000577636 NFE4Q86UQ8 179 aa7.03□□□□□ -1.28
SS18-207ENST00000577636 MAPKAPK5-AS1Q8N8E1 139 aa7.03□□□□□ -1.28
SS18-207ENST00000577636 AMELXQ99217 191 aa7.03□□□□□ -1.28
SS18-207ENST00000577636 GEMIN7Q9H840 131 aaKnown RBP7.03□□□□□ -1.28
SS18-207ENST00000577636 MRPS16Q9Y3D3 137 aaKnown RBP7.03□□□□□ -1.28
SS18-207ENST00000577636 IGLV4-69A0A075B6H9 119 aa7.02□□□□□ -1.29
SS18-207ENST00000577636 H3BRM9 83 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms