RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CLPSL2Q6UWE3 100 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 ATP5L2Q7Z4Y8 100 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 GATD1Q8NB37 220 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 NUP35Q8NFH5 326 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 ANAPC16Q96DE5 110 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 TMEM243Q9BU79 118 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 PRR34Q9NV39 138 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 TRAV8-4A0A0B4J246 113 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 F8W036 122 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 SSTP61278 116 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 RPL32P62910 135 aaKnown RBP6.95□□□□□ -1.3
VPS53-207ENST00000570510 SRSF3P84103 164 aaKnown RBP6.95□□□□□ -1.3
VPS53-207ENST00000570510 SMAGPQ0VAQ4 97 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 NTM-AS1Q6ZSK4 140 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 MUC2Q02817 5179 aa6.95□□□□□ -1.3
VPS53-207ENST00000570510 LPAP08519 4548 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 IGKV2-24A0A0C4DH68 120 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 TRBV27A0A0K0K1C4 114 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 PPBPP02775 128 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 MT-ND4LP03901 98 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 ZNF25P17030 456 aaPredicted RBP6.94□□□□□ -1.3
VPS53-207ENST00000570510 IMMP2LQ96T52 175 aa6.94□□□□□ -1.3
VPS53-207ENST00000570510 IGLV10-54A0A075B6I4 117 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 TRAV26-2A0A0B4J265 109 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 SDHAF1A6NFY7 115 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 I3L3M4 83 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 RAB4AP20338 218 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 LINC00269Q8N2A0 174 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 STPG4Q8N801 248 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 ST20Q9HBF5 79 aa6.93□□□□□ -1.3
VPS53-207ENST00000570510 TRBV24-1A0A075B6N3 115 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 VCYO14598 125 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 UBE2L6O14933 153 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 AMTP48728 403 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 POLR2KP53803 58 aaKnown RBP6.92□□□□□ -1.3
VPS53-207ENST00000570510 RBX1P62877 108 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 HBBP68871 147 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 COX6A2Q02221 97 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 FAM104BQ5XKR9 115 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 C20orf78Q9BR46 151 aa6.92□□□□□ -1.3
VPS53-207ENST00000570510 A0A1B0GXF2 115 aa6.91□□□□□ -1.3
VPS53-207ENST00000570510 APCSP02743 223 aa6.91□□□□□ -1.3
VPS53-207ENST00000570510 LAMTOR2Q9Y2Q5 125 aa6.91□□□□□ -1.3
VPS53-207ENST00000570510 CSDC2Q9Y534 153 aaKnown RBP6.91□□□□□ -1.3
VPS53-207ENST00000570510 TRAV9-1A0A075B6T8 112 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 CCL25O15444 150 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 PMCHP20382 165 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 IFITM2Q01629 132 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 PRR4Q16378 134 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 Q6ZRP5 223 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 MRPL52Q86TS9 123 aaKnown RBP6.9□□□□□ -1.3
VPS53-207ENST00000570510 KIR2DL4Q99706 377 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 SEC11CQ9BY50 192 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 CTDSP1Q9GZU7 261 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 TMEM242Q9NWH2 141 aa6.9□□□□□ -1.3
VPS53-207ENST00000570510 TMEM218A2RU14 115 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 ESDP10768 282 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 SUMO2P61956 95 aaKnown RBP6.89□□□□□ -1.31
VPS53-207ENST00000570510 REG3AQ06141 175 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 GAGE6Q13070 117 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 AMN1Q8IY45 258 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 ZNF664Q8N3J9 261 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 TMEM18Q96B42 140 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 BTF3L4Q96K17 158 aa6.89□□□□□ -1.31
VPS53-207ENST00000570510 PRSS47A8MTI9 375 aa6.88□□□□□ -1.31
VPS53-207ENST00000570510 RPS10P46783 165 aaKnown RBP6.88□□□□□ -1.31
VPS53-207ENST00000570510 CFAP161Q6P656 301 aa6.88□□□□□ -1.31
VPS53-207ENST00000570510 NRACQ8N912 160 aa6.88□□□□□ -1.31
VPS53-207ENST00000570510 C20orf203Q8NBC4 194 aa6.88□□□□□ -1.31
VPS53-207ENST00000570510 RPL39LQ96EH5 51 aaKnown RBP6.88□□□□□ -1.31
VPS53-207ENST00000570510 LINC00474Q9P2X8 69 aa6.88□□□□□ -1.31
VPS53-207ENST00000570510 C7orf77A4D0Y5 90 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 K7EMI3 77 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 SLPIP03973 132 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 CKS2P33552 79 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 SRSF9Q13242 221 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS53-207ENST00000570510 COX19Q49B96 90 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 MRPL51Q4U2R6 128 aaKnown RBP6.87□□□□□ -1.31
VPS53-207ENST00000570510 AMMECR1LQ6DCA0 310 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 PRSS3P2Q8NHM4 247 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 TMEM101Q96IK0 257 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 TIMM21Q9BVV7 248 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 PSORS1C2Q9UIG4 136 aa6.87□□□□□ -1.31
VPS53-207ENST00000570510 FAT4Q6V0I7 4981 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 CAMPP49913 170 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 C10orf91Q5T1B1 145 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 KRTAP26-1Q6PEX3 210 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 ORMDL3Q8N138 153 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 PKIGQ9Y2B9 76 aa6.86□□□□□ -1.31
VPS53-207ENST00000570510 LCE2BO14633 110 aa6.85□□□□□ -1.31
VPS53-207ENST00000570510 TSHBP01222 138 aa6.85□□□□□ -1.31
VPS53-207ENST00000570510 FGF6P10767 208 aa6.85□□□□□ -1.31
VPS53-207ENST00000570510 FCER1GP30273 86 aa6.85□□□□□ -1.31
VPS53-207ENST00000570510 OR5A1Q8NGJ0 315 aa6.85□□□□□ -1.31
VPS53-207ENST00000570510 IGLV4-60A0A075B6I1 120 aa6.84□□□□□ -1.31
VPS53-207ENST00000570510 TNFRSF6BO95407 300 aa6.84□□□□□ -1.31
VPS53-207ENST00000570510 G0S2P27469 103 aa6.84□□□□□ -1.31
VPS53-207ENST00000570510 RHEBQ15382 184 aa6.84□□□□□ -1.31
VPS53-207ENST00000570510 CARHSP1Q9Y2V2 147 aaKnown RBP6.84□□□□□ -1.31
VPS53-207ENST00000570510 LINC01549A6NIU2 74 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms