RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TRBV27A0A0K0K1C4 114 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 CCL25O15444 150 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 RAB14P61106 215 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 FOXI1Q12951 378 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 MAJINQ3KP22 176 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 MRPL52Q86TS9 123 aaKnown RBP9.44□□□□□ -0.9
CLN3-222ENST00000566083 LINC01551Q86U37 167 aa9.44□□□□□ -0.9
CLN3-222ENST00000566083 FAT3Q8TDW7 4589 aa9.43□□□□□ -0.9
CLN3-222ENST00000566083 ZNF727A8MUV8 499 aa9.43□□□□□ -0.9
CLN3-222ENST00000566083 XCL1P47992 114 aa9.43□□□□□ -0.9
CLN3-222ENST00000566083 POLR2KP53803 58 aaKnown RBP9.43□□□□□ -0.9
CLN3-222ENST00000566083 PRSS3P2Q8NHM4 247 aa9.43□□□□□ -0.9
CLN3-222ENST00000566083 UBR4Q5T4S7 5183 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 C7orf77A4D0Y5 90 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 VCYO14598 125 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 TSHBP01222 138 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 RAB4AP20338 218 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 RIGQ13278 110 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 NDUFA5Q16718 116 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 CD164L2Q6UWJ8 174 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 CDC42SE2Q9NRR3 84 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 TMEM242Q9NWH2 141 aa9.42□□□□□ -0.9
CLN3-222ENST00000566083 IGKV2-24A0A0C4DH68 120 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 LINC00862A6NCI5 91 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 ZNF561-AS1K7EIQ3 104 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 PHOX2AO14813 284 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 FAM74A3Q4VXF1 159 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 SLC7A5P1Q8MH63 180 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 ZNF664Q8N3J9 261 aa9.41□□□□□ -0.9
CLN3-222ENST00000566083 CSDC2Q9Y534 153 aaKnown RBP9.41□□□□□ -0.9
CLN3-222ENST00000566083 FCER1GP30273 86 aa9.4□□□□□ -0.9
CLN3-222ENST00000566083 STPG4Q8N801 248 aa9.4□□□□□ -0.9
CLN3-222ENST00000566083 ISOC2Q96AB3 205 aa9.4□□□□□ -0.9
CLN3-222ENST00000566083 CARD19Q96LW7 228 aa9.4□□□□□ -0.9
CLN3-222ENST00000566083 KIR2DL4Q99706 377 aa9.4□□□□□ -0.9
CLN3-222ENST00000566083 C1orf196B1AJZ1 125 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 PPP1R2P9O14990 202 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 AMN1Q8IY45 258 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 TMEM18Q96B42 140 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 TCAPO15273 167 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 TMEM241Q24JQ0 296 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 NAT8BQ9UHF3 227 aa9.39□□□□□ -0.91
CLN3-222ENST00000566083 PKHD1L1Q86WI1 4243 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 A0A096LNI7 61 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 ATP6V1G1O75348 118 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 SRP19P09132 144 aaKnown RBP9.38□□□□□ -0.91
CLN3-222ENST00000566083 MT1HL1P0DM35 61 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 MALP21145 153 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 SUMO2P61956 95 aaKnown RBP9.38□□□□□ -0.91
CLN3-222ENST00000566083 SYCNQ0VAF6 134 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 NUP35Q8NFH5 326 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 V9GYV3 84 aa9.38□□□□□ -0.91
CLN3-222ENST00000566083 A0A1B0GW15 77 aa9.37□□□□□ -0.91
CLN3-222ENST00000566083 GAS8-AS1O95177 125 aa9.37□□□□□ -0.91
CLN3-222ENST00000566083 PRR3P79522 188 aaKnown RBP9.37□□□□□ -0.91
CLN3-222ENST00000566083 COMMD7Q86VX2 200 aa9.37□□□□□ -0.91
CLN3-222ENST00000566083 COX7A2LO14548 114 aa9.36□□□□□ -0.91
CLN3-222ENST00000566083 APOMO95445 188 aa9.35□□□□□ -0.91
CLN3-222ENST00000566083 CAMPP49913 170 aa9.35□□□□□ -0.91
CLN3-222ENST00000566083 SRSF3P84103 164 aaKnown RBP9.35□□□□□ -0.91
CLN3-222ENST00000566083 C20orf78Q9BR46 151 aa9.35□□□□□ -0.91
CLN3-222ENST00000566083 TIMM21Q9BVV7 248 aa9.35□□□□□ -0.91
CLN3-222ENST00000566083 LOC107984640A0A0U1RRK4 108 aa9.34□□□□□ -0.91
CLN3-222ENST00000566083 S100A8P05109 93 aa9.34□□□□□ -0.91
CLN3-222ENST00000566083 SMDT1Q9H4I9 107 aa9.34□□□□□ -0.91
CLN3-222ENST00000566083 IGLV4-69A0A075B6H9 119 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 RPL32P62910 135 aaKnown RBP9.33□□□□□ -0.92
CLN3-222ENST00000566083 FAM104BQ5XKR9 115 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 REG3GQ6UW15 175 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 SPINK6Q6UWN8 80 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 Q6ZRP5 223 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 NRACQ8N912 160 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 C2orf48Q96LS8 159 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 LINC01600Q96MT4 127 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 NAT8Q9UHE5 227 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 UBE2D4Q9Y2X8 147 aa9.33□□□□□ -0.92
CLN3-222ENST00000566083 TRBV24-1A0A075B6N3 115 aa9.32□□□□□ -0.92
CLN3-222ENST00000566083 PTTG1IPP53801 180 aa9.32□□□□□ -0.92
CLN3-222ENST00000566083 RPL23P62829 140 aaKnown RBP9.32□□□□□ -0.92
CLN3-222ENST00000566083 LINC00526Q96FQ7 95 aa9.32□□□□□ -0.92
CLN3-222ENST00000566083 SMIM27A0A1W2PRY6 76 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 C9JQL5 133 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 SMKR1H3BMG3 65 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 CKS2P33552 79 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 PEA15Q15121 130 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 ADIRFQ15847 76 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 CAMK2N2Q96S95 79 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 TRAV13-1A0A0B4J241 112 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 F8W036 122 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 F8WDY8 70 aa9.31□□□□□ -0.92
CLN3-222ENST00000566083 MRPL51Q4U2R6 128 aaKnown RBP9.31□□□□□ -0.92
CLN3-222ENST00000566083 GAGE2BQ13066 116 aa9.3□□□□□ -0.92
CLN3-222ENST00000566083 RNF151Q2KHN1 245 aa9.3□□□□□ -0.92
CLN3-222ENST00000566083 SPANXA1Q9NS26 97 aa9.3□□□□□ -0.92
CLN3-222ENST00000566083 PPBPP02775 128 aa9.29□□□□□ -0.92
CLN3-222ENST00000566083 OR10D4PQ8NGN7 298 aa9.29□□□□□ -0.92
CLN3-222ENST00000566083 A0A0J9YXV3 536 aa9.28□□□□□ -0.92
CLN3-222ENST00000566083 UQCC3Q6UW78 93 aa9.28□□□□□ -0.92
CLN3-222ENST00000566083 TNFRSF6BO95407 300 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms