RNA–Protein interactions for RNA: ENST00000564642.1

SYNGR3-204, Transcript of synaptogyrin 3, humanhuman

TSL 2

Gene SYNGR3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGR3-204ENST00000564642 MRPL52Q86TS9 123 aaKnown RBP11.9□□□□□ -0.5
SYNGR3-204ENST00000564642 C20orf78Q9BR46 151 aa11.9□□□□□ -0.5
SYNGR3-204ENST00000564642 AP5S1Q9NUS5 200 aa11.9□□□□□ -0.5
SYNGR3-204ENST00000564642 TRBV24-1A0A075B6N3 115 aa11.89□□□□□ -0.51
SYNGR3-204ENST00000564642 SMAGPQ0VAQ4 97 aa11.89□□□□□ -0.51
SYNGR3-204ENST00000564642 C9orf163Q8N9P6 203 aa11.89□□□□□ -0.51
SYNGR3-204ENST00000564642 D6R8Y8 96 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 TNFRSF6BO95407 300 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 INAFM2P0DMQ5 153 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 IFITM2Q01629 132 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 SCXQ7RTU7 201 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 TMEM18Q96B42 140 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 CHAC1Q9BUX1 264 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 CDC42SE2Q9NRR3 84 aa11.88□□□□□ -0.51
SYNGR3-204ENST00000564642 LINC00959A0A1B0GUT2 108 aa11.87□□□□□ -0.51
SYNGR3-204ENST00000564642 TCAPO15273 167 aa11.87□□□□□ -0.51
SYNGR3-204ENST00000564642 PPBPP02775 128 aa11.87□□□□□ -0.51
SYNGR3-204ENST00000564642 SS18Q15532 418 aa11.87□□□□□ -0.51
SYNGR3-204ENST00000564642 ZNF664Q8N3J9 261 aa11.87□□□□□ -0.51
SYNGR3-204ENST00000564642 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.86□□□□□ -0.51
SYNGR3-204ENST00000564642 CNBPP62633 177 aaKnown RBP11.86□□□□□ -0.51
SYNGR3-204ENST00000564642 RPL32P62910 135 aaKnown RBP11.86□□□□□ -0.51
SYNGR3-204ENST00000564642 UQCC3Q6UW78 93 aa11.86□□□□□ -0.51
SYNGR3-204ENST00000564642 PHOX2AO14813 284 aa11.85□□□□□ -0.51
SYNGR3-204ENST00000564642 XCL1P47992 114 aa11.85□□□□□ -0.51
SYNGR3-204ENST00000564642 CIRBP-AS1Q8TBR5 109 aa11.85□□□□□ -0.51
SYNGR3-204ENST00000564642 CSDC2Q9Y534 153 aaKnown RBP11.85□□□□□ -0.51
SYNGR3-204ENST00000564642 DMBT1Q9UGM3 2413 aaPredicted RBP11.85□□□□□ -0.51
SYNGR3-204ENST00000564642 CCL25O15444 150 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 NPYP01303 97 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 PLA2G1BP04054 148 aaKnown RBP11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 FOXI1Q12951 378 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 TMEM136Q6ZRR5 245 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 ORMDL3Q8N138 153 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 LINC00528Q8N1L1 170 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 SMIM2Q9BVW6 85 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 UBE2D4Q9Y2X8 147 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 FAT1Q14517 4588 aa11.84□□□□□ -0.51
SYNGR3-204ENST00000564642 HIGD2BQ4VC39 106 aa11.83□□□□□ -0.52
SYNGR3-204ENST00000564642 C15orf56Q8N910 161 aa11.83□□□□□ -0.52
SYNGR3-204ENST00000564642 IGHV3-64A0A075B6Q5 118 aa11.82□□□□□ -0.52
SYNGR3-204ENST00000564642 TMEM218A2RU14 115 aa11.82□□□□□ -0.52
SYNGR3-204ENST00000564642 SDIM1Q6ZPB5 146 aa11.82□□□□□ -0.52
SYNGR3-204ENST00000564642 PRELID3AQ96N28 172 aa11.82□□□□□ -0.52
SYNGR3-204ENST00000564642 SLPIP03973 132 aa11.81□□□□□ -0.52
SYNGR3-204ENST00000564642 TIMM21Q9BVV7 248 aa11.81□□□□□ -0.52
SYNGR3-204ENST00000564642 C1orf196B1AJZ1 125 aa11.8□□□□□ -0.52
SYNGR3-204ENST00000564642 RAB5AP20339 215 aa11.8□□□□□ -0.52
SYNGR3-204ENST00000564642 CD164L2Q6UWJ8 174 aa11.8□□□□□ -0.52
SYNGR3-204ENST00000564642 DNAH8Q96JB1 4490 aa11.8□□□□□ -0.52
SYNGR3-204ENST00000564642 ADCYAP1P18509 176 aa11.79□□□□□ -0.52
SYNGR3-204ENST00000564642 RPL39P62891 51 aaKnown RBP11.79□□□□□ -0.52
SYNGR3-204ENST00000564642 RNASE13Q5GAN3 156 aaKnown RBP11.79□□□□□ -0.52
SYNGR3-204ENST00000564642 DPH3Q96FX2 82 aa11.79□□□□□ -0.52
SYNGR3-204ENST00000564642 GVQW2A0A096LPI5 108 aaPredicted RBP11.78□□□□□ -0.52
SYNGR3-204ENST00000564642 IGHV1-58A0A0C4DH39 117 aa11.78□□□□□ -0.52
SYNGR3-204ENST00000564642 IMMP2LQ96T52 175 aa11.78□□□□□ -0.52
SYNGR3-204ENST00000564642 LAMTOR2Q9Y2Q5 125 aa11.78□□□□□ -0.52
SYNGR3-204ENST00000564642 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.78□□□□□ -0.52
SYNGR3-204ENST00000564642 TRAV13-1A0A0B4J241 112 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 Q6ZUT4 128 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 COMMD7Q86VX2 200 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 SEC11CQ9BY50 192 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 CTDSP1Q9GZU7 261 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 MAP1LC3AQ9H492 121 aa11.77□□□□□ -0.53
SYNGR3-204ENST00000564642 LOC389332A0A1B0GUA5 103 aa11.76□□□□□ -0.53
SYNGR3-204ENST00000564642 SPANXA1Q9NS26 97 aa11.76□□□□□ -0.53
SYNGR3-204ENST00000564642 PRSS47A8MTI9 375 aa11.75□□□□□ -0.53
SYNGR3-204ENST00000564642 MALP21145 153 aa11.75□□□□□ -0.53
SYNGR3-204ENST00000564642 PANO1I0J062 215 aa11.74□□□□□ -0.53
SYNGR3-204ENST00000564642 ZNF561-AS1K7EIQ3 104 aa11.74□□□□□ -0.53
SYNGR3-204ENST00000564642 COX7A2LO14548 114 aa11.74□□□□□ -0.53
SYNGR3-204ENST00000564642 COX6A2Q02221 97 aa11.73□□□□□ -0.53
SYNGR3-204ENST00000564642 VPS13BQ7Z7G8 4022 aa11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 TRAV9-1A0A075B6T8 112 aa11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 S100PP25815 95 aa11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 IFI27P40305 119 aaPredicted RBP11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 MRPS36P82909 103 aaKnown RBP11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 CIRBPQ14011 172 aaKnown RBP11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 Q8N8P6 123 aa11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 LINC00526Q96FQ7 95 aa11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 OPRPNQ99935 248 aaPredicted RBP11.72□□□□□ -0.53
SYNGR3-204ENST00000564642 CHTF8P0CG12 524 aa11.71□□□□□ -0.53
SYNGR3-204ENST00000564642 SRRM2Q9UQ35 2752 aaKnown RBP11.71□□□□□ -0.54
SYNGR3-204ENST00000564642 APOMO95445 188 aa11.7□□□□□ -0.54
SYNGR3-204ENST00000564642 C5orf38Q86SI9 138 aa11.7□□□□□ -0.54
SYNGR3-204ENST00000564642 PRSS3P2Q8NHM4 247 aa11.7□□□□□ -0.54
SYNGR3-204ENST00000564642 CARD19Q96LW7 228 aa11.7□□□□□ -0.54
SYNGR3-204ENST00000564642 IFITM10A6NMD0 228 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 RPL37AP61513 92 aaKnown RBP11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 SYCNQ0VAF6 134 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 SPACA4Q8TDM5 124 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 FAM104AQ969W3 186 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 PKIGQ9Y2B9 76 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 PYGO1Q9Y3Y4 419 aa11.69□□□□□ -0.54
SYNGR3-204ENST00000564642 IGLV4-69A0A075B6H9 119 aa11.68□□□□□ -0.54
SYNGR3-204ENST00000564642 A0A087WYN8 130 aa11.68□□□□□ -0.54
SYNGR3-204ENST00000564642 ORMDL2Q53FV1 153 aa11.68□□□□□ -0.54
SYNGR3-204ENST00000564642 NXT2Q9NPJ8 142 aaKnown RBP11.68□□□□□ -0.54
SYNGR3-204ENST00000564642 IGKV2-24A0A0C4DH68 120 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms