RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PMCHP20382 165 aa5.74□□□□□ -1.49
HDDC3-204ENST00000559834 TAGLN2P37802 199 aaKnown RBP5.74□□□□□ -1.49
HDDC3-204ENST00000559834 Q6ZRP5 223 aa5.74□□□□□ -1.49
HDDC3-204ENST00000559834 OR5A1Q8NGJ0 315 aa5.74□□□□□ -1.49
HDDC3-204ENST00000559834 RPP21Q9H633 154 aaKnown RBP5.74□□□□□ -1.49
HDDC3-204ENST00000559834 TRBV20OR9-2A0A075B6H5 130 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 A0A096LNI7 61 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 IGHV1-58A0A0C4DH39 117 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 SDHAF1A6NFY7 115 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 I3L3M4 83 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 XCL1P47992 114 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 FOXI1Q12951 378 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 PEA15Q15121 130 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 SS18Q15532 418 aa5.73□□□□□ -1.49
HDDC3-204ENST00000559834 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 LINC00959A0A1B0GUT2 108 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 ZNF561-AS1K7EIQ3 104 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 BCL2P10415 239 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 KRTAP10-8P60410 259 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 SYCNQ0VAF6 134 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 ISOC2Q96AB3 205 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 RPL39LQ96EH5 51 aaKnown RBP5.72□□□□□ -1.49
HDDC3-204ENST00000559834 CARD19Q96LW7 228 aa5.72□□□□□ -1.49
HDDC3-204ENST00000559834 EIF5A2Q9GZV4 153 aaKnown RBP5.72□□□□□ -1.49
HDDC3-204ENST00000559834 CCL25O15444 150 aa5.71□□□□□ -1.5
HDDC3-204ENST00000559834 SRSF9Q13242 221 aaKnown RBP eCLIP5.71□□□□□ -1.5
HDDC3-204ENST00000559834 CD164L2Q6UWJ8 174 aa5.71□□□□□ -1.5
HDDC3-204ENST00000559834 OCC1Q8TAD7 63 aa5.71□□□□□ -1.5
HDDC3-204ENST00000559834 BORCS7Q96B45 105 aa5.71□□□□□ -1.5
HDDC3-204ENST00000559834 RNASE7Q9H1E1 156 aaKnown RBP5.71□□□□□ -1.5
HDDC3-204ENST00000559834 TRBV6-5A0A0K0K1A5 114 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 FAM231BA6NCW3 169 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 A8MWL6 223 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 GATCO43716 136 aaKnown RBP5.7□□□□□ -1.5
HDDC3-204ENST00000559834 FOXA3P55318 350 aaPredicted RBP5.7□□□□□ -1.5
HDDC3-204ENST00000559834 LINC00526Q96FQ7 95 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 MRAP2Q96G30 205 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 ST20Q9HBF5 79 aa5.7□□□□□ -1.5
HDDC3-204ENST00000559834 LOC107984640A0A0U1RRK4 108 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 C1orf196B1AJZ1 125 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 K7EN84 100 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 SRP19P09132 144 aaKnown RBP5.69□□□□□ -1.5
HDDC3-204ENST00000559834 ESDP10768 282 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 MALP21145 153 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 SMAGPQ0VAQ4 97 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 GAGE2BQ13066 116 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 MRPL52Q86TS9 123 aaKnown RBP5.69□□□□□ -1.5
HDDC3-204ENST00000559834 ZNF664Q8N3J9 261 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 RPS10P5Q9NQ39 176 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 SMCO4Q9NRQ5 59 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 CDC42SE2Q9NRR3 84 aa5.69□□□□□ -1.5
HDDC3-204ENST00000559834 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 C7orf77A4D0Y5 90 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 CAMPP49913 170 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 PTTG1IPP53801 180 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 RHEBQ15382 184 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 FAM231DQ6ZW35 169 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 SMDT1Q9H4I9 107 aa5.68□□□□□ -1.5
HDDC3-204ENST00000559834 IGLV4-69A0A075B6H9 119 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 COLCA2A8K830 154 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 TMEM250H0YL14 139 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 COX7A2LO14548 114 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 VCYO14598 125 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 TSHBP01222 138 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 CEBPGP53567 150 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 POLR2KP53803 58 aaKnown RBP5.67□□□□□ -1.5
HDDC3-204ENST00000559834 ODF1Q14990 250 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 CAMK2N2Q96S95 79 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 TMEM242Q9NWH2 141 aa5.67□□□□□ -1.5
HDDC3-204ENST00000559834 TRBV27A0A0K0K1C4 114 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 A0A1B0GUT8 65 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 APOMO95445 188 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 PPP1R17O96001 155 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 MT-ND6P03923 174 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 FCER1GP30273 86 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 CT83Q5H943 113 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 TMEM191AQ9H0A3 160 aa5.66□□□□□ -1.5
HDDC3-204ENST00000559834 CSDC2Q9Y534 153 aaKnown RBP5.66□□□□□ -1.5
HDDC3-204ENST00000559834 GAS8-AS1O95177 125 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 RAB4AP20338 218 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 RAB5BP61020 215 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 NUP35Q8NFH5 326 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 TSKUQ8WUA8 353 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 TMEM18Q96B42 140 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 C2orf48Q96LS8 159 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 KIR2DL4Q99706 377 aa5.65□□□□□ -1.5
HDDC3-204ENST00000559834 TRAV13-1A0A0B4J241 112 aa5.64□□□□□ -1.51
HDDC3-204ENST00000559834 A0A1W2PNN7 141 aa5.64□□□□□ -1.51
HDDC3-204ENST00000559834 HIGD1CA8MV81 97 aa5.64□□□□□ -1.51
HDDC3-204ENST00000559834 RNF151Q2KHN1 245 aa5.64□□□□□ -1.51
HDDC3-204ENST00000559834 C9orf116Q5BN46 136 aaPredicted RBP5.64□□□□□ -1.51
HDDC3-204ENST00000559834 MT-ND4LP03901 98 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 RPL18AQ02543 176 aaKnown RBP5.63□□□□□ -1.51
HDDC3-204ENST00000559834 RIGQ13278 110 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 C1orf137Q5JT78 98 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 C5orf38Q86SI9 138 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 AMN1Q8IY45 258 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 YPEL4Q96NS1 127 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 PSORS1C2Q9UIG4 136 aa5.63□□□□□ -1.51
HDDC3-204ENST00000559834 ZNF727A8MUV8 499 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms