RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 LINC00862A6NCI5 91 aa10.72□□□□□ -0.69
NEDD4-212ENST00000557845 MRPL52Q86TS9 123 aaKnown RBP10.72□□□□□ -0.69
NEDD4-212ENST00000557845 CDC42SE2Q9NRR3 84 aa10.72□□□□□ -0.69
NEDD4-212ENST00000557845 LINC00959A0A1B0GUT2 108 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 PANO1I0J062 215 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 PPP1R2P9O14990 202 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 FCER1GP30273 86 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 FOXI1Q12951 378 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 ZNF664Q8N3J9 261 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 KIR2DL4Q99706 377 aa10.71□□□□□ -0.69
NEDD4-212ENST00000557845 IGHV3-64A0A075B6Q5 118 aa10.7□□□□□ -0.7
NEDD4-212ENST00000557845 KRTAP10-4P60372 401 aaPredicted RBP10.7□□□□□ -0.7
NEDD4-212ENST00000557845 MYCBP2O75592 4640 aa10.7□□□□□ -0.7
NEDD4-212ENST00000557845 TRBV24-1A0A075B6N3 115 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 CCL25O15444 150 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 CKS2P33552 79 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 XCL1P47992 114 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 HIGD2BQ4VC39 106 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 MRPL54Q6P161 138 aaKnown RBP10.69□□□□□ -0.7
NEDD4-212ENST00000557845 C20orf78Q9BR46 151 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 HERC1Q15751 4861 aa10.69□□□□□ -0.7
NEDD4-212ENST00000557845 A0A1B0GXF2 115 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 F8W036 122 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 S100A8P05109 93 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 RAB14P61106 215 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 HBBP68871 147 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 CIRBPQ14011 172 aaKnown RBP10.68□□□□□ -0.7
NEDD4-212ENST00000557845 SS18Q15532 418 aa10.68□□□□□ -0.7
NEDD4-212ENST00000557845 CSDC2Q9Y534 153 aaKnown RBP10.68□□□□□ -0.7
NEDD4-212ENST00000557845 FLG2Q5D862 2391 aaPredicted RBP10.67□□□□□ -0.7
NEDD4-212ENST00000557845 GVQW2A0A096LPI5 108 aaPredicted RBP10.67□□□□□ -0.7
NEDD4-212ENST00000557845 TNFRSF6BO95407 300 aa10.67□□□□□ -0.7
NEDD4-212ENST00000557845 UBE2D4Q9Y2X8 147 aa10.67□□□□□ -0.7
NEDD4-212ENST00000557845 RPL32P62910 135 aaKnown RBP10.66□□□□□ -0.7
NEDD4-212ENST00000557845 SMAGPQ0VAQ4 97 aa10.66□□□□□ -0.7
NEDD4-212ENST00000557845 DPH3Q96FX2 82 aa10.66□□□□□ -0.7
NEDD4-212ENST00000557845 D6R8Y8 96 aa10.65□□□□□ -0.7
NEDD4-212ENST00000557845 CD164L2Q6UWJ8 174 aa10.65□□□□□ -0.7
NEDD4-212ENST00000557845 TMEM18Q96B42 140 aa10.65□□□□□ -0.7
NEDD4-212ENST00000557845 IGHV1-58A0A0C4DH39 117 aa10.64□□□□□ -0.71
NEDD4-212ENST00000557845 CHTF8P0CG12 524 aa10.64□□□□□ -0.71
NEDD4-212ENST00000557845 RPL37AP61513 92 aaKnown RBP10.64□□□□□ -0.71
NEDD4-212ENST00000557845 COX6A2Q02221 97 aa10.64□□□□□ -0.71
NEDD4-212ENST00000557845 PNRC1Q12796 327 aaPredicted RBP10.64□□□□□ -0.71
NEDD4-212ENST00000557845 KRTAP29-1A8MX34 341 aaPredicted RBP10.63□□□□□ -0.71
NEDD4-212ENST00000557845 C1orf196B1AJZ1 125 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 TCAPO15273 167 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 NPYP01303 97 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 PPBPP02775 128 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 ATP5L2Q7Z4Y8 100 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 SPACA4Q8TDM5 124 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 TIMM21Q9BVV7 248 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 SMIM2Q9BVW6 85 aa10.63□□□□□ -0.71
NEDD4-212ENST00000557845 A0A087WYN8 130 aa10.62□□□□□ -0.71
NEDD4-212ENST00000557845 J3QL48 77 aa10.62□□□□□ -0.71
NEDD4-212ENST00000557845 PHOX2AO14813 284 aa10.62□□□□□ -0.71
NEDD4-212ENST00000557845 RNASE13Q5GAN3 156 aaKnown RBP10.62□□□□□ -0.71
NEDD4-212ENST00000557845 PRSS3P2Q8NHM4 247 aa10.62□□□□□ -0.71
NEDD4-212ENST00000557845 ANAPC16Q96DE5 110 aa10.62□□□□□ -0.71
NEDD4-212ENST00000557845 MT-ND4LP03901 98 aa10.61□□□□□ -0.71
NEDD4-212ENST00000557845 CLLU1Q5K131 121 aa10.61□□□□□ -0.71
NEDD4-212ENST00000557845 TMEM136Q6ZRR5 245 aa10.61□□□□□ -0.71
NEDD4-212ENST00000557845 LINC00526Q96FQ7 95 aa10.61□□□□□ -0.71
NEDD4-212ENST00000557845 RPL39P62891 51 aaKnown RBP10.6□□□□□ -0.71
NEDD4-212ENST00000557845 Q6ZUT4 128 aa10.6□□□□□ -0.71
NEDD4-212ENST00000557845 ORMDL3Q8N138 153 aa10.6□□□□□ -0.71
NEDD4-212ENST00000557845 TRAV13-1A0A0B4J241 112 aa10.59□□□□□ -0.71
NEDD4-212ENST00000557845 ZNF561-AS1K7EIQ3 104 aa10.59□□□□□ -0.71
NEDD4-212ENST00000557845 COX7A2LO14548 114 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 MALP21145 153 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 MAJINQ3KP22 176 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 FAM104AQ969W3 186 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 PRELID3AQ96N28 172 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 PLAC8Q9NZF1 115 aa10.58□□□□□ -0.72
NEDD4-212ENST00000557845 IGKV2-24A0A0C4DH68 120 aa10.57□□□□□ -0.72
NEDD4-212ENST00000557845 CARD19Q96LW7 228 aa10.57□□□□□ -0.72
NEDD4-212ENST00000557845 DMBT1Q9UGM3 2413 aaPredicted RBP10.56□□□□□ -0.72
NEDD4-212ENST00000557845 PRSS47A8MTI9 375 aa10.56□□□□□ -0.72
NEDD4-212ENST00000557845 RAB5AP20339 215 aa10.56□□□□□ -0.72
NEDD4-212ENST00000557845 HNRNPA3P51991 378 aaKnown RBP10.56□□□□□ -0.72
NEDD4-212ENST00000557845 SYCNQ0VAF6 134 aa10.56□□□□□ -0.72
NEDD4-212ENST00000557845 OPRPNQ99935 248 aaPredicted RBP10.56□□□□□ -0.72
NEDD4-212ENST00000557845 SPANXA1Q9NS26 97 aa10.56□□□□□ -0.72
NEDD4-212ENST00000557845 LRP1Q07954 4544 aaKnown RBP10.56□□□□□ -0.72
NEDD4-212ENST00000557845 PKHD1L1Q86WI1 4243 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 FAT3Q8TDW7 4589 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 IGLV4-69A0A075B6H9 119 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 A0A096LNI7 61 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 MRPS36P82909 103 aaKnown RBP10.55□□□□□ -0.72
NEDD4-212ENST00000557845 IFITM2Q01629 132 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 C5orf38Q86SI9 138 aa10.55□□□□□ -0.72
NEDD4-212ENST00000557845 OXTP01178 125 aa10.54□□□□□ -0.72
NEDD4-212ENST00000557845 STPG4Q8N801 248 aa10.54□□□□□ -0.72
NEDD4-212ENST00000557845 PKIGQ9Y2B9 76 aa10.54□□□□□ -0.72
NEDD4-212ENST00000557845 LAMTOR2Q9Y2Q5 125 aa10.54□□□□□ -0.72
NEDD4-212ENST00000557845 LOC389332A0A1B0GUA5 103 aa10.53□□□□□ -0.72
NEDD4-212ENST00000557845 UQCC3Q6UW78 93 aa10.53□□□□□ -0.72
NEDD4-212ENST00000557845 LINC00474Q9P2X8 69 aa10.53□□□□□ -0.72
NEDD4-212ENST00000557845 APOMO95445 188 aa10.52□□□□□ -0.73
NEDD4-212ENST00000557845 IMMP2LQ96T52 175 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms