RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 FOXA3P55318 350 aaPredicted RBP7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 PNRC1Q12796 327 aaPredicted RBP7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 C7orf33Q8WU49 177 aa7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 TMA7Q9Y2S6 64 aaKnown RBP7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 IGKV2-24A0A0C4DH68 120 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 A8MWL6 223 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 I3L3M4 83 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 PHOX2AO14813 284 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 MAJINQ3KP22 176 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 FAM74A3Q4VXF1 159 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 PRSS3P2Q8NHM4 247 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 BTF3L4Q96K17 158 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 RPS10P5Q9NQ39 176 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 SMCO4Q9NRQ5 59 aa7□□□□□ -1.29
CCDC88C-213ENST00000557455 GVQW2A0A096LPI5 108 aaPredicted RBP6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 ZNF25P17030 456 aaPredicted RBP6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 FOXI1Q12951 378 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 FAM231DQ6ZW35 169 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 OR5A1Q8NGJ0 315 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 BORCS7Q96B45 105 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 TMEM101Q96IK0 257 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 SMIM7Q9BQ49 75 aa6.99□□□□□ -1.29
CCDC88C-213ENST00000557455 TRBV6-5A0A0K0K1A5 114 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 C7orf77A4D0Y5 90 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 ZNF727A8MUV8 499 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 XCL1P47992 114 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 CBLN2Q8IUK8 224 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 STPG4Q8N801 248 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 NAT8Q9UHE5 227 aa6.98□□□□□ -1.29
CCDC88C-213ENST00000557455 TNXBP22105 4242 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 LINC00959A0A1B0GUT2 108 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 FAM231BA6NCW3 169 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 CT83Q5H943 113 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 MRAP2Q96G30 205 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 ST20Q9HBF5 79 aa6.97□□□□□ -1.29
CCDC88C-213ENST00000557455 A0A096LNI7 61 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 IGHV1-58A0A0C4DH39 117 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 CCL25O15444 150 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 GAS8-AS1O95177 125 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 ESDP10768 282 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 SS18Q15532 418 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 TMEM241Q24JQ0 296 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 PKIGQ9Y2B9 76 aa6.96□□□□□ -1.3
CCDC88C-213ENST00000557455 A0A1B0GUT8 65 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 HIGD1CA8MV81 97 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 TSHBP01222 138 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 PRR3P79522 188 aaKnown RBP6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 ADIRFQ15847 76 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 TSKUQ8WUA8 353 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 LINC00526Q96FQ7 95 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 TMEM191AQ9H0A3 160 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 TMEM242Q9NWH2 141 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 LINC00474Q9P2X8 69 aa6.95□□□□□ -1.3
CCDC88C-213ENST00000557455 ZNF561-AS1K7EIQ3 104 aa6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 POLR2KP53803 58 aaKnown RBP6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 CD164L2Q6UWJ8 174 aa6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 CARD19Q96LW7 228 aa6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 CTDSP1Q9GZU7 261 aa6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 CDC42SE2Q9NRR3 84 aa6.94□□□□□ -1.3
CCDC88C-213ENST00000557455 TRBV27A0A0K0K1C4 114 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 MT-ND4LP03901 98 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 RAB4AP20338 218 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 MRPL52Q86TS9 123 aaKnown RBP6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 LINC01551Q86U37 167 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 AMN1Q8IY45 258 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 ZNF664Q8N3J9 261 aa6.93□□□□□ -1.3
CCDC88C-213ENST00000557455 FCER1GP30273 86 aa6.92□□□□□ -1.3
CCDC88C-213ENST00000557455 RPL23P62829 140 aaKnown RBP6.92□□□□□ -1.3
CCDC88C-213ENST00000557455 SYCNQ0VAF6 134 aa6.92□□□□□ -1.3
CCDC88C-213ENST00000557455 LINC01600Q96MT4 127 aa6.92□□□□□ -1.3
CCDC88C-213ENST00000557455 OSTCQ9NRP0 149 aa6.92□□□□□ -1.3
CCDC88C-213ENST00000557455 COLCA2A8K830 154 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 SMKR1H3BMG3 65 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 VCYO14598 125 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 PPP1R2P9O14990 202 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 S100PP25815 95 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 CAMPP49913 170 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 SMAGPQ0VAQ4 97 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 RIGQ13278 110 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 ISOC2Q96AB3 205 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 ANAPC16Q96DE5 110 aa6.91□□□□□ -1.3
CCDC88C-213ENST00000557455 C1orf196B1AJZ1 125 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 PPP1R17O96001 155 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 MALP21145 153 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 SPINK6Q6UWN8 80 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 KRTAP3-3Q9BYR6 98 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 KRTAP3-2Q9BYR7 98 aa6.9□□□□□ -1.3
CCDC88C-213ENST00000557455 IGLV4-69A0A075B6H9 119 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 LOC107984640A0A0U1RRK4 108 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 COX7A2LO14548 114 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 RAB5AP20339 215 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 PTTG1IPP53801 180 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 RAB5BP61020 215 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 SUMO2P61956 95 aaKnown RBP6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 GAGE2BQ13066 116 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 REG3GQ6UW15 175 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 Q6ZRP5 223 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 NUP35Q8NFH5 326 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 KIR2DL4Q99706 377 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 UBE2D4Q9Y2X8 147 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms